Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DOE60_RS00900 Genome accession   NZ_CP029992
Coordinates   160645..161250 (-) Length   201 a.a.
NCBI ID   WP_001202379.1    Uniprot ID   A0A734HUC9
Organism   Salmonella enterica subsp. salamae serovar 56:z10:enx strain SA20011914     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 155645..166250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOE60_RS00885 (DOE60_00885) helD 155863..157916 (-) 2054 Protein_159 DNA helicase IV -
  DOE60_RS00890 (DOE60_00890) - 158040..158486 (+) 447 WP_001261216.1 YccF domain-containing protein -
  DOE60_RS00895 (DOE60_00895) yccS 158505..160658 (+) 2154 WP_058113978.1 YccS family putative transporter -
  DOE60_RS00900 (DOE60_00900) sxy/tfoX 160645..161250 (-) 606 WP_001202379.1 TfoX/Sxy family DNA transformation protein Regulator
  DOE60_RS00905 (DOE60_00905) sulA 161467..161976 (+) 510 WP_000288728.1 SOS-induced cell division inhibitor SulA -
  DOE60_RS00910 (DOE60_00910) ompA 162333..163385 (+) 1053 WP_023177836.1 porin OmpA -
  DOE60_RS00915 (DOE60_00915) matP 163457..163909 (-) 453 WP_058113977.1 macrodomain Ter protein MatP -
  DOE60_RS00920 (DOE60_00920) - 164095..165855 (+) 1761 WP_023177834.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23160.85 Da        Isoelectric Point: 8.7403

>NTDB_id=298104 DOE60_RS00900 WP_001202379.1 160645..161250(-) (sxy/tfoX) [Salmonella enterica subsp. salamae serovar 56:z10:enx strain SA20011914]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPVWLTFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRTLGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=298104 DOE60_RS00900 WP_001202379.1 160645..161250(-) (sxy/tfoX) [Salmonella enterica subsp. salamae serovar 56:z10:enx strain SA20011914]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTATTGTGTGAAGCATCCTCCCGTCTGGCTCACGTTTATGAAGTGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAACAACTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAACACAGGCTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCACACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCGTTAGAAGGCGCAATTGTGGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A734HUC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

76.382

99.005

0.756

Multiple sequence alignment