Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DOE59_RS09320 Genome accession   NZ_CP029989
Coordinates   1947774..1948379 (+) Length   201 a.a.
NCBI ID   WP_053530142.1    Uniprot ID   -
Organism   Salmonella enterica subsp. diarizonae serovar 48:i:z strain SA20121591     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1942774..1953379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOE59_RS09300 (DOE59_09720) - 1943169..1944929 (-) 1761 WP_136058373.1 Lon protease family protein -
  DOE59_RS09305 (DOE59_09725) matP 1945115..1945567 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  DOE59_RS09310 (DOE59_09730) ompA 1945639..1946691 (-) 1053 WP_053530176.1 porin OmpA -
  DOE59_RS09315 (DOE59_09735) sulA 1947048..1947557 (-) 510 WP_023247035.1 SOS-induced cell division inhibitor SulA -
  DOE59_RS09320 (DOE59_09740) sxy/tfoX 1947774..1948379 (+) 606 WP_053530142.1 TfoX/Sxy family DNA transformation protein Regulator
  DOE59_RS09325 (DOE59_09745) yccS 1948366..1950519 (-) 2154 WP_023247033.1 YccS family putative transporter -
  DOE59_RS09330 (DOE59_09750) - 1950538..1950984 (-) 447 WP_001261216.1 YccF domain-containing protein -
  DOE59_RS09335 (DOE59_09755) helD 1951108..1953162 (+) 2055 WP_080070804.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23129.84 Da        Isoelectric Point: 9.0103

>NTDB_id=298087 DOE59_RS09320 WP_053530142.1 1947774..1948379(+) (sxy/tfoX) [Salmonella enterica subsp. diarizonae serovar 48:i:z strain SA20121591]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEQSVPYCVKHPPVWLTFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRVLGAKMCWLRLRQSN
PLLTVKVLYALEGAIAGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=298087 DOE59_RS09320 WP_053530142.1 1947774..1948379(+) (sxy/tfoX) [Salmonella enterica subsp. diarizonae serovar 48:i:z strain SA20121591]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTCTGGGGACGATCCAGTATCGATCCTT
ATTCGGCAGCTATAGTCTGACCGTGGAAGATACCGTCTTTGCGATGGTGGCTAACGGCGAGCTTTATCTCCGCGCCTGTG
AGCAAAGCGTACCCTATTGTGTGAAGCATCCTCCCGTCTGGCTCACATTTATGAAGTGTGGACGCCCTGTTATGCTCAAC
TATTATCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAACTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGGCTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAGAATATGTTACGCGTACTGGGTGCAAAAATGTGCTGGCTAAGGTTGCGACAAAGTAAT
CCTTTGCTGACGGTAAAAGTTCTGTATGCGTTAGAAGGCGCAATTGCTGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGATTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

76.884

99.005

0.761

Multiple sequence alignment