Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DNK50_RS27745 Genome accession   NZ_CP029983
Coordinates   6058706..6060073 (-) Length   455 a.a.
NCBI ID   WP_099584746.1    Uniprot ID   -
Organism   Pseudomonas sp. LG1E9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6053706..6065073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DNK50_RS27725 yjiA 6054753..6055712 (-) 960 WP_112196797.1 GTPase -
  DNK50_RS27730 - 6055850..6056047 (-) 198 WP_003176208.1 YbdD/YjiX family protein -
  DNK50_RS27735 - 6056063..6058129 (-) 2067 WP_112196798.1 carbon starvation CstA family protein -
  DNK50_RS27740 - 6058304..6058672 (+) 369 WP_112196799.1 PilZ domain-containing protein -
  DNK50_RS27745 radA 6058706..6060073 (-) 1368 WP_099584746.1 DNA repair protein RadA Machinery gene
  DNK50_RS27750 - 6060109..6060648 (-) 540 WP_112196800.1 ankyrin repeat domain-containing protein -
  DNK50_RS27755 katB 6060704..6062245 (-) 1542 WP_099584744.1 catalase KatB -
  DNK50_RS27760 mscL 6062532..6062951 (+) 420 WP_099584743.1 large-conductance mechanosensitive channel protein MscL -
  DNK50_RS27765 - 6062999..6063775 (-) 777 WP_112196801.1 ferredoxin--NADP reductase -
  DNK50_RS27770 - 6064157..6064867 (+) 711 WP_112196802.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48702.18 Da        Isoelectric Point: 6.8987

>NTDB_id=298073 DNK50_RS27745 WP_099584746.1 6058706..6060073(-) (radA) [Pseudomonas sp. LG1E9]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGITIIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=298073 DNK50_RS27745 WP_099584746.1 6058706..6060073(-) (radA) [Pseudomonas sp. LG1E9]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGCCAGTGCGGCGAATG
CGGTGCGTGGAACACCCTGACTGAAACCATGATCGAGAGCGGCGGTGCTGCTGCGCCCACTGGTCGTGCGGGCTGGACCG
GGCAGCAGGCACAGATCAAGACCCTGGCCGAAGTCAGTGTCGAAGAAATCCCGCGTTTCTCTACTGCCTCGGGCGAGCTG
GACCGGGTGCTCGGCGGCGGCCTGGTGGACGGCTCGGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAATCCACCAT
CCTGCTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCGGCGCTGTACGTCACCGGCGAAGAATCCCAGCAACAAGTGG
CCATGCGCGCCCGGCGCCTTGGCTTGCCCCAGGATCAGTTGCGGGTCATGACCGAGACTTGCATCGAAAGCATTATCGCC
ACGGCCCGTATCGAAAAGCCCAAGGTGATGGTGATCGACTCGATCCAGACGATTTTCACCGAGCAACTGCAATCGGCGCC
GGGCGGCGTGTCCCAGGTGCGCGAGAGCGCGGCGCTGCTGGTGCGGTATGCCAAGCAGAGCGGCACGGCGATTTTCCTGG
TCGGCCACGTGACCAAAGAGGGGGCACTGGCGGGGCCGCGTGTGTTGGAGCATATGGTCGACACCGTGCTGTATTTCGAG
GGCGAATCCGATGGCCGCCTGCGCTTGCTGCGAGCGGTGAAAAACCGGTTTGGCGCGGTGAATGAACTGGGTGTGTTCGC
CATGACGGACCGGGGATTGAAAGAAGTCTCCAACCCATCGGCGATTTTTCTGACGCGCGCCCAGGAAGAAGTTCCTGGCA
GCGTGGTGATGGCAACGTGGGAAGGCACTCGGCCAATGCTGGTGGAAGTCCAGGCGTTGGTGGATGACAGCCATCTGGCC
AACCCGCGTCGGGTCACGCTGGGACTGGATCAGAACCGCCTGGCGATGTTGCTGGCGGTATTGCACCGCCATGGTGGCAT
TCCGACCCACGACCAGGACGTGTTCCTCAACGTAGTGGGCGGGGTCAAGGTGCTGGAGACTGCATCCGACCTGGCGTTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCATTGCCTCACGACCTGTTGGTGTTTGGTGAAGTCGGCCTGTCTGGT
GAAGTGCGCCCGGTGCCGAGCGGCCAGGAGCGCTTGAAGGAAGCGGCCAAGCATGGCTTCAAGCGCGCCATCGTGCCCAA
GGGCAATGCGCCGAAGGAATCGCCGCCGGGGATCACGATTATTGGAGTCACGCGTTTGGAACAGGCGTTGGATGCGTTGT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus mitis SK321

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468
  radA Streptococcus pneumoniae Rx1

46.711

100

0.468
  radA Streptococcus pneumoniae D39

46.711

100

0.468
  radA Streptococcus pneumoniae R6

46.711

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.711

100

0.468

Multiple sequence alignment