Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   DNK50_RS01480 Genome accession   NZ_CP029983
Coordinates   281081..281488 (-) Length   135 a.a.
NCBI ID   WP_099585833.1    Uniprot ID   -
Organism   Pseudomonas sp. LG1E9     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 276081..286488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DNK50_RS01465 - 278084..280135 (-) 2052 WP_112192664.1 methyl-accepting chemotaxis protein -
  DNK50_RS01470 - 280132..280656 (-) 525 WP_099585832.1 chemotaxis protein CheW -
  DNK50_RS01475 pilH 280669..281034 (-) 366 WP_003176670.1 twitching motility response regulator PilH -
  DNK50_RS01480 pilG 281081..281488 (-) 408 WP_099585833.1 twitching motility response regulator PilG Regulator
  DNK50_RS01485 gshB 281728..282681 (+) 954 WP_112192665.1 glutathione synthase -
  DNK50_RS01490 - 282759..283664 (+) 906 WP_099585835.1 energy transducer TonB -
  DNK50_RS01495 - 283732..284301 (+) 570 WP_099585836.1 YqgE/AlgH family protein -
  DNK50_RS01500 ruvX 284301..284738 (+) 438 WP_112192666.1 Holliday junction resolvase RuvX -
  DNK50_RS01505 pyrR 284812..285318 (+) 507 WP_099585837.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  DNK50_RS01510 - 285343..286347 (+) 1005 WP_099585838.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14931.41 Da        Isoelectric Point: 7.4351

>NTDB_id=298052 DNK50_RS01480 WP_099585833.1 281081..281488(-) (pilG) [Pseudomonas sp. LG1E9]
MEQHSNALRVMVIDDSKTIRRTAETLLKHSGCEVITALDGFDALARIVDHHPHIIFVDIMMPRLDGYQTCALVKNNPAFK
SIPVIMLSSKDGLFDKAKGRIVGVDQFLTKPFSKEELLGAIKAYVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=298052 DNK50_RS01480 WP_099585833.1 281081..281488(-) (pilG) [Pseudomonas sp. LG1E9]
ATGGAACAGCATTCCAACGCCTTGAGAGTGATGGTGATCGACGATTCGAAAACGATCCGCCGCACCGCCGAGACGCTGTT
GAAGCACTCGGGCTGCGAGGTCATTACGGCACTCGACGGTTTCGATGCCCTGGCCCGGATTGTTGATCATCACCCGCACA
TTATCTTTGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACCTGCGCCCTGGTGAAGAACAACCCGGCGTTCAAG
TCGATCCCGGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGGCGCATCGTGGGTGTCGATCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTGGGTGCGATCAAGGCGTATGTGCCGGGGTTCGCCGCAGTAGAACAAG
CACACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

71.2

92.593

0.659

Multiple sequence alignment