Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EQH15_RS05605 Genome accession   NZ_CP035265
Coordinates   1108331..1109998 (-) Length   555 a.a.
NCBI ID   WP_000923583.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901920     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1103331..1114998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH15_RS05580 (EQH15_05875) - 1104246..1104548 (-) 303 WP_000590570.1 PTS sugar transporter subunit IIB -
  EQH15_RS05585 (EQH15_05880) - 1104586..1105062 (-) 477 Protein_1118 PTS sugar transporter subunit IIA -
  EQH15_RS05590 - 1105241..1105618 (+) 378 WP_238090260.1 hypothetical protein -
  EQH15_RS05595 (EQH15_05890) lepA 1105699..1107522 (-) 1824 WP_001047204.1 translation elongation factor 4 -
  EQH15_RS05600 (EQH15_05895) - 1107601..1108329 (-) 729 WP_000133343.1 metallophosphoesterase family protein -
  EQH15_RS05605 (EQH15_05900) recN 1108331..1109998 (-) 1668 WP_000923583.1 DNA repair protein RecN Machinery gene
  EQH15_RS05610 (EQH15_05905) - 1110005..1110436 (-) 432 WP_001034413.1 arginine repressor -
  EQH15_RS05615 (EQH15_05910) - 1110429..1111244 (-) 816 WP_001041079.1 TlyA family RNA methyltransferase -
  EQH15_RS05620 (EQH15_05915) - 1111237..1112112 (-) 876 WP_000743818.1 polyprenyl synthetase family protein -
  EQH15_RS05625 (EQH15_05920) - 1112109..1112321 (-) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  EQH15_RS05630 (EQH15_05925) xseA 1112299..1113639 (-) 1341 WP_000417470.1 exodeoxyribonuclease VII large subunit -
  EQH15_RS05635 (EQH15_05930) udk 1113767..1114405 (-) 639 WP_001181378.1 uridine kinase -
  EQH15_RS05640 (EQH15_05940) - 1114513..1114815 (-) 303 WP_000985089.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62862.27 Da        Isoelectric Point: 4.5999

>NTDB_id=298032 EQH15_RS05605 WP_000923583.1 1108331..1109998(-) (recN) [Streptococcus pneumoniae strain TVO_1901920]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLDLNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QYGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=298032 EQH15_RS05605 WP_000923583.1 1108331..1109998(-) (recN) [Streptococcus pneumoniae strain TVO_1901920]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAGTTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGATCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCCATGAATGACATGGAAAGTGTCGAAGAGTATGACCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTCATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATGAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGTATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACAGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44