Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   EQH15_RS05415 Genome accession   NZ_CP035265
Coordinates   1068134..1069204 (+) Length   356 a.a.
NCBI ID   WP_000817886.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901920     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1063134..1074204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH15_RS11035 (EQH15_05685) - 1064099..1064290 (+) 192 WP_350339622.1 LPXTG cell wall anchor domain-containing protein -
  EQH15_RS05400 (EQH15_05690) ylqF 1064457..1065308 (+) 852 WP_000201313.1 ribosome biogenesis GTPase YlqF -
  EQH15_RS05405 (EQH15_05695) - 1065295..1066074 (+) 780 WP_000201142.1 ribonuclease HII -
  EQH15_RS05410 (EQH15_05700) - 1066090..1067640 (+) 1551 WP_000392542.1 ClC family H(+)/Cl(-) exchange transporter -
  EQH15_RS05415 (EQH15_05705) xerS 1068134..1069204 (+) 1071 WP_000817886.1 tyrosine recombinase XerS Machinery gene
  EQH15_RS05420 (EQH15_05710) - 1069277..1070266 (-) 990 WP_000873984.1 lipoate--protein ligase -
  EQH15_RS05425 (EQH15_05715) lpdA 1070330..1072033 (-) 1704 WP_001162928.1 dihydrolipoyl dehydrogenase -
  EQH15_RS05430 (EQH15_05720) - 1072079..1073122 (-) 1044 WP_000227311.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41143.24 Da        Isoelectric Point: 9.7561

>NTDB_id=298029 EQH15_RS05415 WP_000817886.1 1068134..1069204(+) (xerS) [Streptococcus pneumoniae strain TVO_1901920]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAKNIKQK
LFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVSDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=298029 EQH15_RS05415 WP_000817886.1 1068134..1069204(+) (xerS) [Streptococcus pneumoniae strain TVO_1901920]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTGGCTGTGCCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAAGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTAAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTGCGTGTAACACCCCATAAACTGCGCCATACACTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCTAGCACACAAGTCACTGACCTCTATACCCATATTGTTAGTGA
TGAACAAAAGAATGCTCTGGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)

Phage integrase family (Phage_integrase)

(188-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

99.438

100

0.994