Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   EQH15_RS05380 Genome accession   NZ_CP035265
Coordinates   1049620..1052895 (+) Length   1091 a.a.
NCBI ID   WP_000772328.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901920     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1044620..1057895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH15_RS05350 (EQH15_05630) - 1044685..1045131 (-) 447 WP_000131107.1 DUF1694 domain-containing protein -
  EQH15_RS05355 (EQH15_05635) eno 1045295..1046599 (+) 1305 WP_000022813.1 surface-displayed alpha-enolase -
  EQH15_RS05360 (EQH15_05640) - 1046737..1046880 (-) 144 Protein_1071 integrase -
  EQH15_RS05365 (EQH15_05645) - 1046915..1048221 (-) 1307 Protein_1072 transposase -
  EQH15_RS05370 (EQH15_05650) - 1048338..1049094 (-) 757 Protein_1073 IS630 family transposase -
  EQH15_RS05375 (EQH15_05660) - 1049265..1049420 (+) 156 Protein_1074 diacylglycerol kinase family lipid kinase -
  EQH15_RS05380 (EQH15_05665) rexB 1049620..1052895 (+) 3276 WP_000772328.1 ATP-dependent nuclease subunit B Machinery gene
  EQH15_RS05385 (EQH15_05670) rexA 1052892..1056542 (+) 3651 WP_054382111.1 helicase-exonuclease AddAB subunit AddA Machinery gene

Sequence

Protein


Download         Length: 1091 a.a.        Molecular weight: 124775.57 Da        Isoelectric Point: 5.5445

>NTDB_id=298027 EQH15_RS05380 WP_000772328.1 1049620..1052895(+) (rexB) [Streptococcus pneumoniae strain TVO_1901920]
MKLLYTDIRTSLTEILTREAEELVAAGKRVFYIAPNSLSFEKERAVLECLSQQASFSITVTRFAQMARYLVLNDLPAKTT
LDDIGLGLAFYKCLAELDPKDLRVYGAIKQDPQLIQQLIELYHEMTKSQMNFLDLENLTDEDKRADLLLIFEKVTAYLNQ
GQLAQGSQLSHLIEAIENDKISSDFNQIALVIDGFTRFSAEEERVVDLLHGKGVEIVIGAYASKKAYTSPFSEGNLYQAS
VKFLHHLASKYQTPAQDCSQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQKLH
ENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILALKRYRFRQEDLTNLLRTDLYTDL
SQSDIDAFEQYIRYLGINGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWNVFLKEGVVTK
QLQDLTATMEAIEQERQAEVWKAFCHVLEQFATVFAGSQISLEDFLALLHSGMSLSQYRTIPATVDTVLVQSYDLIAPLT
ADFVYAIGLTQDNLPKIAQNTSLLTDEERQNINQATEEGVQLLIASSENLKKNRYTMLSLVNSARKQLVLSAPSLFNESE
SKESAYLQELVHLGFSRKEKRMNHKRLSKEDMGSYHSLLSSLVAYHQQGETSDTEQDLTFVKVLARVMGKKLDQQGLENP
ALPTSPSSKQLTKDTLQALYPAEQEFYLSTSGLTEFYRNQYSYFLRYVLGLQEELRLRPDARSHGNFLHRIFERALQLPD
EDSFDNRLEQAIQETSQEREFEAIYQESLEAQFTKEVLLDVARTTGHILRHNPVIETIKEEANFGGKEQAFIQLDNGRSV
FVRGKVDRIDRLKADGAIGVVDYKSSLTQFQFPHFFNGLNSQLPTYLAALKREGEQNFFGAMYLEMAEPVQSLMAVKSLA
GAVVEASKSMKYQGLFLEKESSYLGEFYNKNKANQLTDEEFQLLLDYNAYLYKKAAEKILAGRFAINPYTENGRSIAPYV
QQHQAITGFEANYHLGQARFLEKLDLADGKRLVGEKLKQAWLEKIREELNR

Nucleotide


Download         Length: 3276 bp        

>NTDB_id=298027 EQH15_RS05380 WP_000772328.1 1049620..1052895(+) (rexB) [Streptococcus pneumoniae strain TVO_1901920]
ATGAAATTACTTTATACTGATATTCGGACTTCTTTGACAGAAATTCTAACAAGAGAGGCAGAAGAGCTAGTTGCAGCTGG
CAAGCGGGTCTTCTACATTGCCCCCAACTCTCTTTCTTTTGAAAAGGAACGCGCCGTGCTGGAATGCTTGTCCCAGCAGG
CTTCTTTTTCGATTACCGTCACGCGCTTTGCTCAAATGGCTCGTTATCTGGTCTTGAATGATTTACCAGCTAAAACTACT
CTTGATGATATCGGTCTTGGGTTGGCCTTTTACAAATGCCTTGCCGAACTCGATCCCAAGGACTTGCGTGTTTATGGCGC
TATTAAGCAGGATCCTCAATTGATCCAGCAGTTAATTGAGCTTTACCATGAGATGACCAAATCTCAGATGAATTTTTTGG
ACTTGGAGAATTTAACAGATGAGGATAAGAGGGCGGATTTACTCTTGATTTTTGAGAAAGTAACAGCCTATCTTAATCAA
GGTCAGTTAGCCCAGGGAAGTCAGTTGTCCCATTTGATTGAGGCTATTGAGAATGACAAGATAAGTAGTGATTTTAATCA
AATCGCCTTGGTCATTGACGGCTTTACTCGTTTTTCTGCTGAGGAAGAGCGGGTTGTGGACTTACTTCACGGCAAAGGTG
TTGAGATTGTTATCGGGGCTTATGCTAGTAAGAAAGCCTATACCAGTCCTTTTAGCGAGGGCAATCTCTACCAAGCCAGC
GTAAAATTTCTCCATCATCTGGCTTCTAAATACCAAACGCCTGCTCAGGACTGTTCTCAAACCCATGAGAAGATGGATAG
TTTTGACAAGGCCTCTCGTTTGTTGGAGTCTTCTTATGACTTTTCAGAACTCGCTTTGGATGTCGATGAGAAAGACCGTG
AAAATTTACAAATCTGGTCTTGTTTGACGCAAAAGGAGGAGTTGGAGCTAGTAGCCCGTAGTATTCGTCAGAAATTACAT
GAGAACTCAGACCTGAGCTACAAGCATTTTCGTATTCTCTTGGGGGATGTAGCTTCTTACCAGTTATCTCTCAAAACCAT
TTTTGACCAGTATCAGATTCCTTTTTATCTTGGTAGAAGCGAAGCCATGGCTCATCATCCCTTGACTCAGTTTGTCGAGT
CTATTTTAGCTTTAAAACGTTACCGTTTTCGTCAGGAGGATTTGACTAATCTTCTTAGAACTGATTTGTATACTGACCTC
AGTCAGTCTGATATTGATGCTTTTGAGCAATATATCCGCTATCTTGGTATCAATGGCTTGCCAGCCTTTCAGCAAACCTT
CACCAAATCCCACCATGGAAAATTTAATCTTGAGCGTTTGAATGTCCTCCGTCTGAGAATTTTAGCACCTCTTGAAACCC
TCTTTGCTAGCCGAAAACAAAAGGCCGAAAATCTCTTGCAAAAGTGGAATGTCTTTCTAAAAGAAGGAGTGGTGACCAAG
CAGTTACAAGATTTGACAGCCACTATGGAAGCTATAGAACAGGAAAGACAAGCCGAGGTTTGGAAGGCATTCTGTCATGT
TTTAGAACAATTTGCGACTGTTTTTGCTGGTTCACAGATTAGTCTAGAGGACTTCCTAGCCTTGCTCCATTCTGGAATGA
GTTTGTCTCAGTATCGCACTATTCCAGCGACAGTGGACACCGTTCTGGTGCAGAGTTACGATTTGATTGCGCCTTTGACT
GCTGACTTTGTCTACGCCATTGGGCTAACTCAGGACAATTTACCAAAAATCGCGCAAAATACCAGTCTTTTGACAGATGA
AGAAAGACAAAACATAAACCAAGCGACCGAAGAAGGCGTTCAATTACTGATTGCCAGCAGTGAAAATCTCAAGAAAAATC
GCTACACTATGCTTTCTTTGGTCAATTCTGCCCGTAAGCAATTAGTTTTGTCGGCTCCAAGCCTTTTTAATGAAAGTGAA
AGCAAGGAGTCAGCCTATCTTCAAGAGTTGGTCCATTTGGGATTTAGTCGAAAAGAGAAGAGGATGAATCACAAAAGGCT
GTCTAAGGAAGATATGGGATCCTATCACAGTCTTTTGTCCAGTCTGGTTGCCTATCACCAGCAGGGCGAGACGAGTGATA
CTGAGCAAGATTTGACCTTTGTCAAGGTTCTGGCGCGTGTGATGGGTAAAAAACTAGACCAGCAAGGTTTGGAAAATCCT
GCCCTTCCAACCAGTCCAAGCAGTAAGCAGTTGACCAAAGATACCTTACAAGCTCTCTATCCTGCTGAACAGGAATTTTA
CCTATCTACGTCCGGTTTGACCGAGTTTTACAGAAACCAATACAGTTATTTCCTCCGCTACGTGTTAGGCTTGCAGGAGG
AATTACGTTTGCGTCCGGATGCTCGCAGTCATGGAAATTTCTTGCACCGCATTTTTGAACGTGCCTTGCAGTTGCCTGAT
GAAGATTCCTTTGACAACCGTCTAGAACAAGCTATTCAAGAAACTAGTCAAGAACGCGAATTTGAAGCTATTTATCAAGA
AAGTTTGGAAGCCCAGTTTACCAAAGAAGTTTTGCTTGATGTTGCACGGACGACTGGTCACATTCTCCGCCATAATCCAG
TCATCGAAACCATTAAAGAAGAGGCAAATTTCGGTGGGAAAGAGCAAGCCTTTATTCAATTGGACAATGGACGCAGTGTC
TTTGTACGAGGTAAGGTGGACCGGATTGACCGTTTGAAAGCTGATGGAGCGATAGGAGTAGTAGACTACAAGTCGAGTCT
AACTCAGTTCCAGTTTCCTCATTTCTTTAATGGGCTCAATTCTCAGTTACCAACCTATCTTGCTGCCCTAAAAAGAGAAG
GGGAGCAGAATTTTTTCGGCGCCATGTACTTGGAAATGGCTGAACCTGTCCAATCTCTGATGGCGGTAAAAAGTCTGGCA
GGAGCAGTGGTAGAAGCCAGCAAATCTATGAAATACCAAGGGCTCTTCTTGGAAAAAGAAAGCAGTTATTTAGGCGAATT
TTATAACAAAAACAAGGCGAATCAACTGACAGATGAGGAATTTCAGCTCCTACTGGACTACAATGCCTATCTTTACAAGA
AAGCTGCTGAGAAGATTTTAGCAGGCCGGTTCGCCATCAATCCTTATACTGAAAATGGCAGAAGCATTGCCCCATACGTC
CAGCAACATCAGGCTATTACAGGCTTTGAAGCCAATTACCATCTGGGCCAAGCCCGTTTCCTAGAAAAGTTGGACCTAGC
TGATGGCAAGCGTCTGGTCGGAGAAAAACTCAAGCAAGCTTGGCTTGAAAAAATAAGAGAGGAGTTGAATCGATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(748-1030)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

96.884

100

0.969