Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SPJ_RS08405 Genome accession   NC_012466
Coordinates   1617976..1619247 (+) Length   423 a.a.
NCBI ID   WP_001113214.1    Uniprot ID   A0A0H2URL5
Organism   Streptococcus pneumoniae JJA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1612976..1624247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPJ_RS08365 (SPJ_1684) - 1613167..1614201 (-) 1035 WP_000747916.1 ATP-binding protein -
  SPJ_RS08370 (SPJ_1685) - 1614335..1614469 (-) 135 Protein_1598 7,8-dihydro-8-oxoguanine-triphosphatase -
  SPJ_RS08375 (SPJ_1686) - 1614450..1615538 (-) 1089 WP_000719713.1 site-2 protease family protein -
  SPJ_RS08380 (SPJ_1687) - 1615557..1616027 (-) 471 WP_000257103.1 DUF3013 family protein -
  SPJ_RS08385 (SPJ_1688) - 1616318..1616770 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  SPJ_RS08390 (SPJ_1689) - 1616807..1616986 (-) 180 WP_001132287.1 type II toxin-antitoxin system HicA family toxin -
  SPJ_RS08395 (SPJ_1690) - 1617123..1617302 (-) 180 WP_001048906.1 hypothetical protein -
  SPJ_RS08405 (SPJ_1691) rarA 1617976..1619247 (+) 1272 WP_001113214.1 replication-associated recombination protein A Machinery gene
  SPJ_RS08415 (SPJ_1693) - 1619794..1621113 (-) 1320 WP_000502538.1 glycoside hydrolase family 32 protein -
  SPJ_RS08420 (SPJ_1694) - 1621123..1622739 (-) 1617 WP_000669745.1 ABC transporter substrate-binding protein -
  SPJ_RS08425 (SPJ_1695) - 1622768..1623658 (-) 891 WP_000797955.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46999.46 Da        Isoelectric Point: 5.9471

>NTDB_id=29799 SPJ_RS08405 WP_001113214.1 1617976..1619247(+) (rarA) [Streptococcus pneumoniae JJA]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYTARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDRLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=29799 SPJ_RS08405 WP_001113214.1 1617976..1619247(+) (rarA) [Streptococcus pneumoniae JJA]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCTGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGTAGCCGAGTTCAAATTTTCGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTAGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATTCGTGGCTCAGATGTGGATGCCAGTCTCCACTATACTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCCCAGAAGATTGGGTTCCCAGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTACGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCGTTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 8G28

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.518

99.054

0.57

Multiple sequence alignment