Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DNL43_RS01830 Genome accession   NZ_CP029971
Coordinates   341412..343223 (-) Length   603 a.a.
NCBI ID   WP_056981984.1    Uniprot ID   A0A8E1V2E7
Organism   Lentilactobacillus kefiri strain DH5     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 336412..348223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DNL43_RS01800 (DNL43_01810) - 336671..337183 (-) 513 WP_056982108.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  DNL43_RS01805 (DNL43_01815) - 337200..338048 (-) 849 WP_056982106.1 methyltransferase domain-containing protein -
  DNL43_RS01810 (DNL43_01820) - 338162..339058 (-) 897 WP_054769833.1 RluA family pseudouridine synthase -
  DNL43_RS01815 (DNL43_01825) - 339051..339863 (-) 813 WP_056982105.1 NAD kinase -
  DNL43_RS01820 (DNL43_01830) - 339841..340509 (-) 669 WP_056982104.1 GTP pyrophosphokinase family protein -
  DNL43_RS01825 (DNL43_01835) - 340723..341352 (+) 630 WP_056982103.1 DsbA family protein -
  DNL43_RS01830 (DNL43_01840) pepF 341412..343223 (-) 1812 WP_056981984.1 oligoendopeptidase F Regulator
  DNL43_RS01835 (DNL43_01845) - 343257..344414 (-) 1158 WP_225366631.1 competence protein CoiA -
  DNL43_RS01840 (DNL43_01850) - 344551..346083 (+) 1533 WP_056981980.1 gamma-glutamylcysteine synthetase -
  DNL43_RS01845 (DNL43_01855) - 346152..347462 (-) 1311 WP_056981979.1 cell wall metabolism sensor histidine kinase WalK -
  DNL43_RS01850 (DNL43_01860) - 347459..348151 (-) 693 WP_156644973.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69588.66 Da        Isoelectric Point: 4.8155

>NTDB_id=297987 DNL43_RS01830 WP_056981984.1 341412..343223(-) (pepF) [Lentilactobacillus kefiri strain DH5]
MAKTQELPLRKDVPEKLTWDLTTVYSSDADFEKDFTEVKADSKKFAGLSGTIEKDAESLLKATEDLLKLSRTLEKVYVYS
QLKNDQDTSEDKYQAMYSRSEALAAQFGAATAWFEPELLKISDDKMAQFYKDEPKLTDYKRFYDQTFERRDHILGNDVEE
VLAGADDIFSSGEKTFGILDNTDLSFPAVTDENGNKVKLSQGVYGILLESTDQSVRKEAFEKLYEVYDQFQHTLASTLTT
NVKNHNFKANIRHYNSALEAALAGNEVSTDVYNNLIKVVNKHLDLLHRYVALRKKILGLDELHMYDMYTSLVGNQSPKYT
FEQSKKIALEALQVMGPDYVSHVKEEFNGRWIDVVENQFKRSGGYSSGTYDTNPFILLNWKDNLDNLYTLIHETGHSMHS
YYSHHNQPYQYGDYSIFVAEIASTTNENILTDYLLNKFKDDDQMKKFILNYYLDGFKGTVFRQTQFAEFEQYIHEQDAQG
QPLTAKFMDQYYLDLNKKYYGDAVVSDPQIALEWARIPHFYYNFYVYQYSTGFAAASTLADGIVNGTQDNIDKYLNYLKS
GSSDTPTNVMKKAGVDMTKPDYLEKAFQIFEDRLNEFERLYNK

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=297987 DNL43_RS01830 WP_056981984.1 341412..343223(-) (pepF) [Lentilactobacillus kefiri strain DH5]
ATGGCTAAAACACAAGAACTGCCTCTTAGAAAAGATGTTCCTGAAAAATTGACTTGGGACTTAACCACCGTTTATTCGTC
CGATGCAGACTTTGAGAAGGACTTTACTGAAGTGAAGGCTGATTCAAAGAAGTTTGCCGGGCTGTCCGGCACCATTGAAA
AAGACGCCGAATCATTACTCAAGGCGACCGAAGATTTGCTGAAACTCAGCCGGACGTTGGAAAAAGTGTATGTTTATTCT
CAGTTGAAGAATGATCAGGATACCAGCGAGGACAAATACCAAGCAATGTATTCCCGTTCAGAGGCTTTAGCCGCCCAATT
TGGTGCGGCGACTGCATGGTTTGAACCGGAACTGTTGAAGATTTCCGATGACAAGATGGCCCAATTTTATAAGGACGAGC
CTAAATTAACTGACTATAAACGTTTTTACGACCAGACTTTTGAACGTCGTGACCATATTTTAGGCAACGACGTCGAAGAA
GTCCTTGCCGGAGCTGACGATATCTTCTCCTCAGGTGAAAAGACTTTTGGCATTTTGGATAATACTGATTTGTCATTCCC
AGCTGTCACTGATGAAAATGGCAACAAGGTCAAGCTCTCACAGGGTGTTTATGGCATCTTGCTGGAATCCACCGATCAAA
GTGTTCGTAAAGAAGCCTTCGAGAAGTTGTACGAAGTTTATGATCAATTTCAGCATACATTGGCATCAACTCTGACGACC
AACGTCAAAAATCATAATTTTAAAGCCAACATTCGCCACTATAATAGTGCTTTGGAAGCTGCTCTGGCAGGCAATGAAGT
TTCAACTGATGTCTACAATAATTTAATTAAGGTTGTCAATAAGCACCTGGATCTTTTGCATCGATATGTTGCTTTGAGAA
AAAAGATTCTCGGTCTCGATGAGCTGCATATGTATGACATGTATACTTCTTTAGTGGGTAATCAATCACCAAAATATACA
TTTGAGCAGTCCAAAAAGATTGCTTTGGAGGCCCTTCAGGTTATGGGCCCCGACTATGTCAGCCACGTTAAAGAGGAATT
TAACGGGCGTTGGATTGACGTTGTTGAAAACCAGTTCAAGCGAAGTGGGGGCTATTCATCCGGAACATACGATACCAATC
CATTTATCTTACTGAACTGGAAGGACAACCTGGATAACTTGTATACTTTGATTCATGAAACCGGTCATAGTATGCACAGT
TACTACTCACATCATAATCAACCATATCAGTATGGGGATTATTCTATTTTTGTCGCAGAAATTGCCTCAACGACCAATGA
AAATATCTTAACGGACTATTTGCTGAACAAATTCAAAGATGACGACCAGATGAAGAAATTCATTTTGAATTATTATCTGG
ATGGATTTAAGGGAACCGTCTTCCGTCAAACCCAGTTTGCCGAATTTGAACAGTATATCCATGAACAGGATGCCCAAGGC
CAACCGTTGACAGCCAAGTTTATGGATCAGTATTATCTTGATTTGAATAAGAAATATTATGGTGATGCGGTTGTTTCGGA
TCCACAGATTGCGCTGGAATGGGCCCGAATTCCTCATTTCTATTACAATTTCTATGTTTACCAATACTCGACCGGGTTTG
CTGCGGCCTCAACGTTAGCTGACGGCATTGTCAACGGTACCCAAGACAACATTGATAAATATTTGAATTATTTGAAATCA
GGCAGTTCCGATACGCCAACCAATGTCATGAAAAAAGCCGGGGTTGATATGACCAAGCCCGACTATCTCGAAAAAGCATT
CCAGATTTTTGAAGATCGTTTGAATGAATTCGAACGGTTGTATAACAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.872

98.507

0.531

Multiple sequence alignment