Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   C0W45_RS08615 Genome accession   NZ_CP029966
Coordinates   1643215..1645023 (+) Length   602 a.a.
NCBI ID   WP_111447869.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain ZJUNIT8     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1638215..1650023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0W45_RS08605 (C0W45_08605) - 1640396..1641634 (-) 1239 WP_080752751.1 NupC/NupG family nucleoside CNT transporter -
  C0W45_RS08610 (C0W45_08610) - 1641813..1643021 (-) 1209 WP_111447868.1 LCP family protein -
  C0W45_RS08615 (C0W45_08615) pepF 1643215..1645023 (+) 1809 WP_111447869.1 oligoendopeptidase F Regulator
  C0W45_RS08620 (C0W45_08620) - 1645064..1645840 (-) 777 WP_054644252.1 metal ABC transporter permease -
  C0W45_RS08625 (C0W45_08625) - 1645875..1646555 (-) 681 WP_004265149.1 metal ABC transporter ATP-binding protein -
  C0W45_RS08630 (C0W45_08630) - 1646552..1647439 (-) 888 WP_039098315.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  C0W45_RS08635 (C0W45_08635) - 1647713..1648294 (-) 582 WP_054644247.1 hypothetical protein -
  C0W45_RS08640 (C0W45_08640) - 1648400..1649941 (-) 1542 WP_004265146.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67376.45 Da        Isoelectric Point: 4.6986

>NTDB_id=297979 C0W45_RS08615 WP_111447869.1 1643215..1645023(+) (pepF) [Latilactobacillus curvatus strain ZJUNIT8]
MSTQQLPTRNAVPEKLTWDLTTIFKNDAAFEVAFKKVKTQLPTLKTLDRPFESADQLVATIKQILATFRQLETIYVYASM
KNDQDTANATYQGYQAQVDSLAAEVSAAAAFLDPAILAIPIVQLTTWLSESPALAKYSHFIQTITDSRDHVLSGQEEALL
AAAGDIFSAASQTFSVLDNSDLQFPEVTDENGQTFQLSDGVYSQLLQSANRSVRQAAFEALYKTYGQFKNTFATTLATEI
KGHNYLAQVHHYDSARQAALAPKAIPEAVYTTLVDQVNQHLPLLHRYTELRKKQLNLSELHMFDLYTPLLGKPALTYTYE
QAQATAKEALSILGPDYAKQVAHIFDDRLIDVCENQGKRSGAYSGGAYDTNPFILLNWQDDLNNLYTLVHETGHSVHSAF
TRQTQDYVYGDYPIFVAEIASTTNENLLTEYLLQTQSDPKIQAYLLNYYLDGFKGTVFRQTQFAEFEHAMHAAAANGQPL
TAEFMSQQYADINSRYYGPAVVNDPQIALEWTRIPHFYMNYYVYQYATGFAAATTLANGISTKQPSALDHYLDYLKAGSS
AYPIEIMQQAGVDMTSADYLERAFAVFEERLDQLEALLANLN

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=297979 C0W45_RS08615 WP_111447869.1 1643215..1645023(+) (pepF) [Latilactobacillus curvatus strain ZJUNIT8]
ATGTCAACTCAACAACTCCCCACCCGCAATGCTGTTCCAGAAAAGCTCACATGGGACTTAACCACGATTTTCAAAAATGA
TGCAGCTTTTGAAGTAGCCTTTAAGAAAGTTAAAACGCAATTACCCACACTCAAAACACTTGATCGTCCGTTTGAATCGG
CTGATCAATTAGTCGCTACAATCAAACAAATCTTAGCCACTTTCCGCCAACTCGAAACAATTTACGTTTATGCTAGCATG
AAAAATGATCAGGATACTGCTAACGCAACTTATCAAGGCTATCAAGCCCAAGTGGACAGCTTAGCGGCCGAAGTTTCAGC
CGCCGCTGCTTTCTTAGACCCTGCGATTCTCGCAATTCCTATTGTTCAATTGACCACTTGGTTGTCAGAATCCCCTGCTT
TAGCCAAATACAGCCATTTCATTCAAACCATTACCGATAGTCGAGACCATGTCTTATCTGGGCAAGAAGAAGCCTTGTTA
GCTGCTGCCGGTGATATCTTCAGTGCTGCTAGTCAAACCTTCAGCGTCTTAGACAACTCGGATTTACAATTCCCAGAAGT
GACTGACGAAAACGGACAAACGTTTCAGCTTTCAGACGGGGTCTACAGCCAACTTTTGCAATCAGCCAACCGATCAGTCC
GCCAAGCAGCCTTCGAAGCACTTTACAAAACTTATGGTCAATTCAAAAATACATTTGCGACGACGCTTGCCACTGAAATC
AAAGGTCATAATTACTTAGCTCAAGTCCATCACTACGATAGTGCACGCCAAGCAGCGCTAGCACCCAAAGCAATTCCAGA
AGCCGTCTATACAACCTTGGTTGATCAAGTGAACCAACACTTACCACTTTTACATCGCTATACTGAATTACGCAAAAAGC
AACTTAATTTATCTGAATTACACATGTTTGATCTCTACACACCACTTTTAGGAAAACCCGCATTAACCTACACTTATGAG
CAGGCGCAAGCAACTGCCAAAGAAGCATTGTCGATCCTAGGACCCGATTACGCCAAACAAGTTGCCCATATTTTTGATGA
CCGCTTAATCGATGTTTGTGAAAACCAAGGGAAACGGAGTGGCGCCTATTCTGGCGGCGCTTATGACACCAACCCCTTCA
TTTTATTAAACTGGCAAGATGATTTAAACAACTTATACACATTGGTCCATGAAACGGGGCATAGTGTCCACAGCGCCTTC
ACCCGTCAGACCCAAGATTATGTTTATGGCGACTATCCAATTTTCGTGGCCGAAATTGCGTCAACAACCAATGAAAATCT
CTTAACGGAATATTTATTGCAAACACAGTCTGATCCTAAGATCCAGGCCTATCTACTAAACTACTATTTGGATGGTTTTA
AAGGCACTGTTTTCCGTCAAACGCAATTCGCTGAGTTCGAACATGCGATGCATGCTGCCGCTGCCAATGGTCAGCCACTA
ACTGCCGAGTTCATGTCACAACAATATGCGGACATTAATAGCCGCTACTACGGACCTGCCGTCGTTAACGATCCACAGAT
TGCCCTTGAATGGACTCGGATTCCACATTTCTACATGAACTATTATGTTTACCAATACGCAACCGGCTTTGCTGCTGCAA
CGACTCTCGCTAACGGTATTAGCACCAAACAGCCCAGTGCTCTCGATCACTATTTAGACTACCTAAAAGCTGGGAGCTCC
GCCTACCCAATTGAAATTATGCAACAAGCCGGCGTCGATATGACGAGTGCCGACTATCTCGAACGCGCTTTTGCAGTTTT
CGAAGAACGTCTGGATCAACTCGAAGCCCTACTTGCTAACCTAAATTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(205-585)

Oligopeptidase F (Peptidase_M3_N)

(116-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.653

98.173

0.537

Multiple sequence alignment