Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | C0W45_RS05850 | Genome accession | NZ_CP029966 |
| Coordinates | 1130160..1130831 (-) | Length | 223 a.a. |
| NCBI ID | WP_004270751.1 | Uniprot ID | A0A1B2A7J9 |
| Organism | Latilactobacillus curvatus strain ZJUNIT8 | ||
| Function | dsDNA binding to the cell surface (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1110879..1130101 | 1130160..1130831 | flank | 59 |
Gene organization within MGE regions
Location: 1110879..1130831
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C0W45_RS10535 (C0W45_05760) | - | 1110879..1111181 (+) | 303 | Protein_1117 | helix-turn-helix domain-containing protein | - |
| C0W45_RS05765 (C0W45_05765) | - | 1111302..1112192 (-) | 891 | WP_338121227.1 | IS3 family transposase | - |
| C0W45_RS05770 (C0W45_05770) | - | 1112198..1112449 (-) | 252 | WP_002816285.1 | IS3 family transposase | - |
| C0W45_RS05775 (C0W45_05775) | uvrC | 1112626..1114404 (-) | 1779 | WP_065825717.1 | excinuclease ABC subunit UvrC | - |
| C0W45_RS05780 (C0W45_05780) | - | 1114474..1115205 (-) | 732 | WP_056966004.1 | amino acid ABC transporter ATP-binding protein | - |
| C0W45_RS05785 (C0W45_05785) | - | 1115198..1116619 (-) | 1422 | WP_375163234.1 | ABC transporter substrate-binding protein/permease | - |
| C0W45_RS10305 | - | 1116797..1116949 (+) | 153 | WP_004271218.1 | SPJ_0845 family protein | - |
| C0W45_RS05790 (C0W45_05790) | - | 1117061..1117354 (-) | 294 | WP_004271114.1 | nucleoside triphosphate pyrophosphohydrolase family protein | - |
| C0W45_RS05795 (C0W45_05795) | yihA | 1117354..1117953 (-) | 600 | WP_004271111.1 | ribosome biogenesis GTP-binding protein YihA/YsxC | - |
| C0W45_RS05800 (C0W45_05800) | clpX | 1118151..1119404 (-) | 1254 | WP_039099649.1 | ATP-dependent Clp protease ATP-binding subunit ClpX | - |
| C0W45_RS05805 (C0W45_05805) | tig | 1119612..1120907 (-) | 1296 | WP_004271115.1 | trigger factor | - |
| C0W45_RS05810 (C0W45_05810) | tuf | 1121116..1122306 (-) | 1191 | WP_039099648.1 | elongation factor Tu | - |
| C0W45_RS05815 (C0W45_05815) | - | 1122526..1123470 (-) | 945 | WP_111447700.1 | hypothetical protein | - |
| C0W45_RS05820 (C0W45_05820) | - | 1123553..1125271 (-) | 1719 | WP_035186941.1 | ribonuclease J | - |
| C0W45_RS05825 (C0W45_05825) | rpsO | 1125474..1125743 (-) | 270 | WP_004271112.1 | 30S ribosomal protein S15 | - |
| C0W45_RS05830 (C0W45_05830) | rpsT | 1126020..1126274 (+) | 255 | WP_004271117.1 | 30S ribosomal protein S20 | - |
| C0W45_RS05835 (C0W45_05835) | holA | 1126329..1127357 (-) | 1029 | WP_004270758.1 | DNA polymerase III subunit delta | - |
| C0W45_RS05840 (C0W45_05840) | comEC | 1127358..1129472 (-) | 2115 | WP_235805391.1 | DNA internalization-related competence protein ComEC/Rec2 | Machinery gene |
| C0W45_RS05845 (C0W45_05845) | - | 1129613..1130101 (-) | 489 | WP_111447701.1 | ComE operon protein 2 | - |
| C0W45_RS05850 (C0W45_05850) | comEA | 1130160..1130831 (-) | 672 | WP_004270751.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
Sequence
Protein
Download Length: 223 a.a. Molecular weight: 24849.51 Da Isoelectric Point: 9.9048
>NTDB_id=297967 C0W45_RS05850 WP_004270751.1 1130160..1130831(-) (comEA) [Latilactobacillus curvatus strain ZJUNIT8]
MWRDYWQRYRRFWWVPCLVIILLGGGVFWQHSRQQRFLSTNQQLMAQSTKRKVKAKPVKQKKSVSKGGFVDIKGAVAHPG
IYPICVAKTRLFEVLKQAGDVTEAADTSQLNLAQTLSDQLIIYVPTKGEAVQAEELVKAADEPQAATDNQAGASPISTDA
KINLNQADATQLQTLNGIGPKKAEQIIAYRDEQGQFKQIEDLQKVGGIGPKTFEQLRPQICVN
MWRDYWQRYRRFWWVPCLVIILLGGGVFWQHSRQQRFLSTNQQLMAQSTKRKVKAKPVKQKKSVSKGGFVDIKGAVAHPG
IYPICVAKTRLFEVLKQAGDVTEAADTSQLNLAQTLSDQLIIYVPTKGEAVQAEELVKAADEPQAATDNQAGASPISTDA
KINLNQADATQLQTLNGIGPKKAEQIIAYRDEQGQFKQIEDLQKVGGIGPKTFEQLRPQICVN
Nucleotide
Download Length: 672 bp
>NTDB_id=297967 C0W45_RS05850 WP_004270751.1 1130160..1130831(-) (comEA) [Latilactobacillus curvatus strain ZJUNIT8]
ATGTGGCGCGACTATTGGCAACGGTATCGTCGATTCTGGTGGGTACCTTGTTTGGTGATAATTTTACTTGGTGGTGGTGT
GTTTTGGCAGCATAGTCGGCAACAACGTTTTCTATCAACCAATCAACAATTGATGGCGCAATCAACTAAGCGAAAAGTGA
AGGCAAAACCCGTCAAACAGAAGAAAAGCGTCTCAAAAGGTGGGTTTGTCGATATCAAAGGCGCTGTGGCACATCCAGGG
ATTTATCCGATTTGTGTTGCAAAGACGCGTTTATTTGAGGTGCTGAAACAAGCGGGGGATGTGACCGAAGCAGCGGATAC
GAGTCAGTTGAACTTAGCGCAAACATTGAGTGACCAACTTATTATCTATGTGCCAACTAAGGGAGAAGCGGTGCAAGCCG
AAGAATTAGTGAAAGCGGCAGACGAGCCACAGGCTGCGACTGACAATCAAGCGGGAGCCAGTCCGATATCAACTGATGCT
AAAATCAACCTAAACCAAGCGGATGCGACACAATTGCAAACGCTAAATGGCATCGGTCCTAAAAAAGCTGAACAAATAAT
TGCATATCGGGATGAGCAAGGGCAGTTTAAACAAATCGAAGATCTTCAAAAAGTTGGGGGAATTGGGCCGAAAACGTTTG
AACAATTACGGCCACAAATTTGTGTTAATTAG
ATGTGGCGCGACTATTGGCAACGGTATCGTCGATTCTGGTGGGTACCTTGTTTGGTGATAATTTTACTTGGTGGTGGTGT
GTTTTGGCAGCATAGTCGGCAACAACGTTTTCTATCAACCAATCAACAATTGATGGCGCAATCAACTAAGCGAAAAGTGA
AGGCAAAACCCGTCAAACAGAAGAAAAGCGTCTCAAAAGGTGGGTTTGTCGATATCAAAGGCGCTGTGGCACATCCAGGG
ATTTATCCGATTTGTGTTGCAAAGACGCGTTTATTTGAGGTGCTGAAACAAGCGGGGGATGTGACCGAAGCAGCGGATAC
GAGTCAGTTGAACTTAGCGCAAACATTGAGTGACCAACTTATTATCTATGTGCCAACTAAGGGAGAAGCGGTGCAAGCCG
AAGAATTAGTGAAAGCGGCAGACGAGCCACAGGCTGCGACTGACAATCAAGCGGGAGCCAGTCCGATATCAACTGATGCT
AAAATCAACCTAAACCAAGCGGATGCGACACAATTGCAAACGCTAAATGGCATCGGTCCTAAAAAAGCTGAACAAATAAT
TGCATATCGGGATGAGCAAGGGCAGTTTAAACAAATCGAAGATCTTCAAAAAGTTGGGGGAATTGGGCCGAAAACGTTTG
AACAATTACGGCCACAAATTTGTGTTAATTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Latilactobacillus sakei subsp. sakei 23K |
64.53 |
100 |
0.677 |
| comEA | Lactococcus lactis subsp. cremoris KW2 |
36.283 |
100 |
0.368 |