Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   EQH16_RS05640 Genome accession   NZ_CP035264
Coordinates   1084350..1087625 (+) Length   1091 a.a.
NCBI ID   WP_000772328.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901921     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1079350..1092625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH16_RS05610 (EQH16_05885) - 1079415..1079861 (-) 447 WP_000131107.1 DUF1694 domain-containing protein -
  EQH16_RS05615 (EQH16_05890) eno 1080025..1081329 (+) 1305 WP_000022813.1 surface-displayed alpha-enolase -
  EQH16_RS05620 (EQH16_05895) - 1081467..1081610 (-) 144 Protein_1125 integrase -
  EQH16_RS05625 (EQH16_05900) - 1081645..1082951 (-) 1307 Protein_1126 transposase -
  EQH16_RS05630 (EQH16_05905) - 1083068..1083824 (-) 757 Protein_1127 IS630 family transposase -
  EQH16_RS05635 (EQH16_05915) - 1083995..1084150 (+) 156 Protein_1128 diacylglycerol kinase family lipid kinase -
  EQH16_RS05640 (EQH16_05920) rexB 1084350..1087625 (+) 3276 WP_000772328.1 ATP-dependent nuclease subunit B Machinery gene
  EQH16_RS05645 (EQH16_05925) rexA 1087622..1091272 (+) 3651 WP_000767221.1 helicase-exonuclease AddAB subunit AddA Machinery gene

Sequence

Protein


Download         Length: 1091 a.a.        Molecular weight: 124775.57 Da        Isoelectric Point: 5.5445

>NTDB_id=297909 EQH16_RS05640 WP_000772328.1 1084350..1087625(+) (rexB) [Streptococcus pneumoniae strain TVO_1901921]
MKLLYTDIRTSLTEILTREAEELVAAGKRVFYIAPNSLSFEKERAVLECLSQQASFSITVTRFAQMARYLVLNDLPAKTT
LDDIGLGLAFYKCLAELDPKDLRVYGAIKQDPQLIQQLIELYHEMTKSQMNFLDLENLTDEDKRADLLLIFEKVTAYLNQ
GQLAQGSQLSHLIEAIENDKISSDFNQIALVIDGFTRFSAEEERVVDLLHGKGVEIVIGAYASKKAYTSPFSEGNLYQAS
VKFLHHLASKYQTPAQDCSQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQKLH
ENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILALKRYRFRQEDLTNLLRTDLYTDL
SQSDIDAFEQYIRYLGINGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWNVFLKEGVVTK
QLQDLTATMEAIEQERQAEVWKAFCHVLEQFATVFAGSQISLEDFLALLHSGMSLSQYRTIPATVDTVLVQSYDLIAPLT
ADFVYAIGLTQDNLPKIAQNTSLLTDEERQNINQATEEGVQLLIASSENLKKNRYTMLSLVNSARKQLVLSAPSLFNESE
SKESAYLQELVHLGFSRKEKRMNHKRLSKEDMGSYHSLLSSLVAYHQQGETSDTEQDLTFVKVLARVMGKKLDQQGLENP
ALPTSPSSKQLTKDTLQALYPAEQEFYLSTSGLTEFYRNQYSYFLRYVLGLQEELRLRPDARSHGNFLHRIFERALQLPD
EDSFDNRLEQAIQETSQEREFEAIYQESLEAQFTKEVLLDVARTTGHILRHNPVIETIKEEANFGGKEQAFIQLDNGRSV
FVRGKVDRIDRLKADGAIGVVDYKSSLTQFQFPHFFNGLNSQLPTYLAALKREGEQNFFGAMYLEMAEPVQSLMAVKSLA
GAVVEASKSMKYQGLFLEKESSYLGEFYNKNKANQLTDEEFQLLLDYNAYLYKKAAEKILAGRFAINPYTENGRSIAPYV
QQHQAITGFEANYHLGQARFLEKLDLADGKRLVGEKLKQAWLEKIREELNR

Nucleotide


Download         Length: 3276 bp        

>NTDB_id=297909 EQH16_RS05640 WP_000772328.1 1084350..1087625(+) (rexB) [Streptococcus pneumoniae strain TVO_1901921]
ATGAAATTACTTTATACTGATATTCGGACTTCTTTGACAGAAATTCTAACAAGAGAGGCAGAAGAGCTAGTTGCAGCTGG
CAAGCGGGTCTTCTACATTGCCCCCAACTCTCTTTCTTTTGAAAAGGAACGCGCCGTGCTGGAATGCTTGTCCCAGCAGG
CTTCTTTTTCGATTACCGTCACGCGCTTTGCTCAAATGGCTCGTTATCTGGTCTTGAATGATTTACCAGCTAAAACTACT
CTTGATGATATCGGTCTTGGGTTGGCCTTTTACAAATGCCTTGCCGAACTCGATCCCAAGGACTTGCGTGTTTATGGCGC
TATTAAGCAGGATCCTCAATTGATCCAGCAGTTAATTGAGCTTTACCATGAGATGACCAAATCTCAGATGAATTTTTTGG
ACTTGGAGAATTTAACAGATGAGGATAAGAGGGCGGATTTACTCTTGATTTTTGAGAAAGTAACAGCCTATCTTAATCAA
GGTCAGTTAGCCCAGGGAAGTCAGTTGTCCCATTTGATTGAGGCTATTGAGAATGACAAGATAAGTAGTGATTTTAATCA
AATCGCCTTGGTCATTGACGGCTTTACTCGTTTTTCTGCTGAGGAAGAGCGGGTTGTGGACTTACTTCACGGCAAAGGTG
TTGAGATTGTTATCGGGGCTTATGCTAGTAAGAAAGCCTATACCAGTCCTTTTAGCGAGGGCAATCTCTACCAAGCCAGC
GTAAAATTTCTCCATCATCTGGCTTCTAAATACCAAACGCCTGCTCAGGACTGTTCTCAAACCCATGAGAAGATGGATAG
TTTTGACAAGGCCTCTCGTTTGTTGGAGTCTTCTTATGACTTTTCAGAACTCGCTTTGGATGTCGATGAGAAAGACCGTG
AAAATTTACAAATCTGGTCTTGTTTGACGCAAAAGGAGGAGTTGGAGCTAGTAGCCCGTAGTATTCGTCAGAAATTACAT
GAGAACTCAGACCTGAGCTACAAGCATTTTCGTATTCTCTTGGGGGATGTAGCTTCTTACCAGTTATCTCTCAAAACCAT
TTTTGACCAGTATCAGATTCCTTTTTATCTTGGTAGAAGCGAAGCCATGGCTCATCATCCCTTGACTCAGTTTGTCGAGT
CTATTTTAGCTTTAAAACGTTACCGTTTTCGTCAGGAGGATTTGACTAATCTTCTTAGAACTGATTTGTATACTGACCTC
AGTCAGTCTGATATTGATGCTTTTGAGCAATATATCCGCTATCTTGGTATCAATGGCTTGCCAGCCTTTCAGCAAACCTT
CACCAAATCCCACCATGGAAAATTTAATCTTGAGCGTTTGAATGTCCTCCGTCTGAGAATTTTAGCACCTCTTGAAACCC
TCTTTGCTAGCCGAAAACAAAAGGCCGAAAATCTCTTGCAAAAGTGGAATGTCTTTCTAAAAGAAGGAGTGGTGACCAAG
CAGTTACAAGATTTGACAGCCACTATGGAAGCTATAGAACAGGAAAGACAAGCCGAGGTTTGGAAGGCATTCTGTCATGT
TTTAGAACAATTTGCGACTGTTTTTGCTGGTTCACAGATTAGTCTAGAGGACTTCCTAGCCTTGCTCCATTCTGGAATGA
GTTTGTCTCAGTATCGCACTATTCCAGCGACAGTGGACACCGTTCTGGTGCAGAGTTACGATTTGATTGCGCCTTTGACT
GCTGACTTTGTCTACGCCATTGGGCTAACTCAGGACAATTTACCAAAAATCGCGCAAAATACCAGTCTTTTGACAGATGA
AGAAAGACAAAACATAAACCAAGCGACCGAAGAAGGCGTTCAATTACTGATTGCCAGCAGTGAAAATCTCAAGAAAAATC
GCTACACTATGCTTTCTTTGGTCAATTCTGCCCGTAAGCAATTAGTTTTGTCGGCTCCAAGCCTTTTTAATGAAAGTGAA
AGCAAGGAGTCAGCCTATCTTCAAGAGTTGGTCCATTTGGGATTTAGTCGAAAAGAGAAGAGGATGAATCACAAAAGGCT
GTCTAAGGAAGATATGGGATCCTATCACAGTCTTTTGTCCAGTCTGGTTGCCTATCACCAGCAGGGCGAGACGAGTGATA
CTGAGCAAGATTTGACCTTTGTCAAGGTTCTGGCGCGTGTGATGGGTAAAAAACTAGACCAGCAAGGTTTGGAAAATCCT
GCCCTTCCAACCAGTCCAAGCAGTAAGCAGTTGACCAAAGATACCTTACAAGCTCTCTATCCTGCTGAACAGGAATTTTA
CCTATCTACGTCCGGTTTGACCGAGTTTTACAGAAACCAATACAGTTATTTCCTCCGCTACGTGTTAGGCTTGCAGGAGG
AATTACGTTTGCGTCCGGATGCTCGCAGTCATGGAAATTTCTTGCACCGCATTTTTGAACGTGCCTTGCAGTTGCCTGAT
GAAGATTCCTTTGACAACCGTCTAGAACAAGCTATTCAAGAAACTAGTCAAGAACGCGAATTTGAAGCTATTTATCAAGA
AAGTTTGGAAGCCCAGTTTACCAAAGAAGTTTTGCTTGATGTTGCACGGACGACTGGTCACATTCTCCGCCATAATCCAG
TCATCGAAACCATTAAAGAAGAGGCAAATTTCGGTGGGAAAGAGCAAGCCTTTATTCAATTGGACAATGGACGCAGTGTC
TTTGTACGAGGTAAGGTGGACCGGATTGACCGTTTGAAAGCTGATGGAGCGATAGGAGTAGTAGACTACAAGTCGAGTCT
AACTCAGTTCCAGTTTCCTCATTTCTTTAATGGGCTCAATTCTCAGTTACCAACCTATCTTGCTGCCCTAAAAAGAGAAG
GGGAGCAGAATTTTTTCGGCGCCATGTACTTGGAAATGGCTGAACCTGTCCAATCTCTGATGGCGGTAAAAAGTCTGGCA
GGAGCAGTGGTAGAAGCCAGCAAATCTATGAAATACCAAGGGCTCTTCTTGGAAAAAGAAAGCAGTTATTTAGGCGAATT
TTATAACAAAAACAAGGCGAATCAACTGACAGATGAGGAATTTCAGCTCCTACTGGACTACAATGCCTATCTTTACAAGA
AAGCTGCTGAGAAGATTTTAGCAGGCCGGTTCGCCATCAATCCTTATACTGAAAATGGCAGAAGCATTGCCCCATACGTC
CAGCAACATCAGGCTATTACAGGCTTTGAAGCCAATTACCATCTGGGCCAAGCCCGTTTCCTAGAAAAGTTGGACCTAGC
TGATGGCAAGCGTCTGGTCGGAGAAAAACTCAAGCAAGCTTGGCTTGAAAAAATAAGAGAGGAGTTGAATCGATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(748-1030)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

96.884

100

0.969