Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | BCERKBAB4_RS06395 | Genome accession | NC_010184 |
| Coordinates | 1267706..1268029 (-) | Length | 107 a.a. |
| NCBI ID | WP_002030429.1 | Uniprot ID | A0A084J505 |
| Organism | Bacillus mycoides KBAB4 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1262706..1273029
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCERKBAB4_RS06365 (BcerKBAB4_1191) | sipW | 1263027..1263596 (+) | 570 | WP_002064334.1 | signal peptidase I SipW | - |
| BCERKBAB4_RS06370 (BcerKBAB4_1192) | - | 1263663..1264250 (+) | 588 | WP_000172837.1 | CalY family protein | - |
| BCERKBAB4_RS06375 (BcerKBAB4_1193) | - | 1264352..1264648 (+) | 297 | WP_002135468.1 | transposase | - |
| BCERKBAB4_RS06380 (BcerKBAB4_1194) | - | 1264657..1265538 (+) | 882 | WP_002140633.1 | IS3 family transposase | - |
| BCERKBAB4_RS06385 (BcerKBAB4_1195) | - | 1265717..1266586 (+) | 870 | WP_012260580.1 | DUF4047 domain-containing protein | - |
| BCERKBAB4_RS06390 (BcerKBAB4_1196) | calY | 1267030..1267623 (+) | 594 | WP_002126106.1 | biofilm matrix protein CalY | - |
| BCERKBAB4_RS06395 (BcerKBAB4_1197) | sinR | 1267706..1268029 (-) | 324 | WP_002030429.1 | helix-turn-helix domain-containing protein | Regulator |
| BCERKBAB4_RS06400 (BcerKBAB4_1198) | - | 1268109..1268243 (-) | 135 | WP_002011474.1 | anti-repressor SinI family protein | - |
| BCERKBAB4_RS06405 (BcerKBAB4_1199) | inhA1 | 1268586..1270973 (+) | 2388 | WP_002126109.1 | M6 family metalloprotease immune inhibitor InhA1 | - |
| BCERKBAB4_RS06410 (BcerKBAB4_1200) | - | 1271144..1272511 (+) | 1368 | WP_002140905.1 | aldehyde dehydrogenase | - |
Sequence
Protein
Download Length: 107 a.a. Molecular weight: 12274.04 Da Isoelectric Point: 7.2050
>NTDB_id=29788 BCERKBAB4_RS06395 WP_002030429.1 1267706..1268029(-) (sinR) [Bacillus mycoides KBAB4]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTTEGHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTQWKKNQQ
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTTEGHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTQWKKNQQ
Nucleotide
Download Length: 324 bp
>NTDB_id=29788 BCERKBAB4_RS06395 WP_002030429.1 1267706..1268029(-) (sinR) [Bacillus mycoides KBAB4]
ATGATAGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGCATTTCATTAACAGAACTCGCCGAAAAAGCTGGTGTCGC
TAAATCTTACATTAGTTCTATAGAACGGAATTTACAAAAAAACCCTTCTATTCAGTTTCTTGAAAAAATTGCAGCTGTTC
TACAAATTCCAGTTGATACTTTACTTCACGATGAAACAACAACGGAGGGTCACCTAGACTCCGAATGGACACAGCTCGTT
AAAGATGCGATGAGCTCTGGTGTCTCAAAAGAACAGTTTCGTGAATTTCTCGAATTTACACAATGGAAGAAAAATCAACA
ATAA
ATGATAGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGCATTTCATTAACAGAACTCGCCGAAAAAGCTGGTGTCGC
TAAATCTTACATTAGTTCTATAGAACGGAATTTACAAAAAAACCCTTCTATTCAGTTTCTTGAAAAAATTGCAGCTGTTC
TACAAATTCCAGTTGATACTTTACTTCACGATGAAACAACAACGGAGGGTCACCTAGACTCCGAATGGACACAGCTCGTT
AAAGATGCGATGAGCTCTGGTGTCTCAAAAGAACAGTTTCGTGAATTTCTCGAATTTACACAATGGAAGAAAAATCAACA
ATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
67.89 |
100 |
0.692 |