Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EQH17_RS05260 Genome accession   NZ_CP035263
Coordinates   1050664..1052331 (+) Length   555 a.a.
NCBI ID   WP_000923583.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901922     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1045664..1057331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH17_RS05225 (EQH17_05520) - 1045847..1046149 (+) 303 WP_000985092.1 bacteriocin immunity protein -
  EQH17_RS05230 (EQH17_05530) udk 1046257..1046895 (+) 639 WP_001181378.1 uridine kinase -
  EQH17_RS05235 (EQH17_05535) xseA 1047023..1048363 (+) 1341 WP_000417489.1 exodeoxyribonuclease VII large subunit -
  EQH17_RS05240 (EQH17_05540) - 1048341..1048553 (+) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  EQH17_RS05245 (EQH17_05545) - 1048550..1049425 (+) 876 WP_000743819.1 polyprenyl synthetase family protein -
  EQH17_RS05250 (EQH17_05550) - 1049418..1050233 (+) 816 WP_001041078.1 TlyA family RNA methyltransferase -
  EQH17_RS05255 (EQH17_05555) - 1050226..1050657 (+) 432 WP_001034415.1 arginine repressor -
  EQH17_RS05260 (EQH17_05560) recN 1050664..1052331 (+) 1668 WP_000923583.1 DNA repair protein RecN Machinery gene
  EQH17_RS05265 (EQH17_05565) - 1052333..1053061 (+) 729 WP_000133343.1 metallophosphoesterase family protein -
  EQH17_RS05270 (EQH17_05570) lepA 1053140..1054963 (+) 1824 WP_001047191.1 translation elongation factor 4 -
  EQH17_RS05275 (EQH17_05580) - 1055421..1055897 (+) 477 WP_000242204.1 PTS sugar transporter subunit IIA -
  EQH17_RS05280 (EQH17_05585) - 1055935..1056237 (+) 303 WP_000590556.1 PTS sugar transporter subunit IIB -
  EQH17_RS05285 (EQH17_05590) - 1056245..1057064 (+) 820 Protein_1060 IS5 family transposase -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62862.27 Da        Isoelectric Point: 4.5999

>NTDB_id=297791 EQH17_RS05260 WP_000923583.1 1050664..1052331(+) (recN) [Streptococcus pneumoniae strain TVO_1901922]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLDLNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QYGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=297791 EQH17_RS05260 WP_000923583.1 1050664..1052331(+) (recN) [Streptococcus pneumoniae strain TVO_1901922]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGATCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCCATGAATGACATGGAAAGTGTCGAAGAGTATGACCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTGATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATGAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGTATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACAGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44