Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EQH18_RS05265 Genome accession   NZ_CP035262
Coordinates   1048746..1050413 (+) Length   555 a.a.
NCBI ID   WP_000923593.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901923     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1043746..1055413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH18_RS05230 (EQH18_05525) - 1043929..1044231 (+) 303 WP_000985092.1 bacteriocin immunity protein -
  EQH18_RS05235 (EQH18_05535) udk 1044339..1044977 (+) 639 WP_001181378.1 uridine kinase -
  EQH18_RS05240 (EQH18_05540) xseA 1045105..1046445 (+) 1341 WP_000417489.1 exodeoxyribonuclease VII large subunit -
  EQH18_RS05245 (EQH18_05545) - 1046423..1046635 (+) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  EQH18_RS05250 (EQH18_05550) - 1046632..1047507 (+) 876 WP_000743819.1 polyprenyl synthetase family protein -
  EQH18_RS05255 (EQH18_05555) - 1047500..1048315 (+) 816 WP_001041069.1 TlyA family RNA methyltransferase -
  EQH18_RS05260 (EQH18_05560) - 1048308..1048739 (+) 432 WP_001034415.1 arginine repressor -
  EQH18_RS05265 (EQH18_05565) recN 1048746..1050413 (+) 1668 WP_000923593.1 DNA repair protein RecN Machinery gene
  EQH18_RS05270 (EQH18_05570) - 1050415..1051143 (+) 729 WP_000133339.1 metallophosphoesterase family protein -
  EQH18_RS05275 (EQH18_05575) lepA 1051222..1053045 (+) 1824 WP_001047212.1 translation elongation factor 4 -
  EQH18_RS05280 (EQH18_05585) - 1053503..1053979 (+) 477 WP_000242204.1 PTS sugar transporter subunit IIA -
  EQH18_RS05285 (EQH18_05590) - 1054017..1054319 (+) 303 WP_000590556.1 PTS sugar transporter subunit IIB -
  EQH18_RS05290 (EQH18_05595) - 1054327..1055146 (+) 820 Protein_1064 IS5 family transposase -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62822.25 Da        Isoelectric Point: 4.6517

>NTDB_id=297675 EQH18_RS05265 WP_000923593.1 1048746..1050413(+) (recN) [Streptococcus pneumoniae strain TVO_1901923]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRTIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=297675 EQH18_RS05265 WP_000923593.1 1048746..1050413(+) (recN) [Streptococcus pneumoniae strain TVO_1901923]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAACTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCCATGAATGACATGGAAAGTGTCGAAGAGTATGACCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTCATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATGAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAAGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACGGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44

Multiple sequence alignment