Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   SPJ_RS02710 Genome accession   NC_012466
Coordinates   513145..513411 (+) Length   88 a.a.
NCBI ID   WP_012677043.1    Uniprot ID   -
Organism   Streptococcus pneumoniae JJA     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 508145..518411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPJ_RS02690 (SPJ_0535) - 508356..508865 (+) 510 WP_000619933.1 N-acetyltransferase -
  SPJ_RS02695 (SPJ_0536) pheT 508942..511347 (+) 2406 WP_000961532.1 phenylalanine--tRNA ligase subunit beta -
  SPJ_RS02700 (SPJ_0537) - 511415..512416 (-) 1002 WP_000597971.1 endonuclease/exonuclease/phosphatase family protein -
  SPJ_RS02705 (SPJ_0538) - 512572..513060 (+) 489 Protein_516 IS30 family transposase -
  SPJ_RS02710 (SPJ_0539) HI0659 513145..513411 (+) 267 WP_012677043.1 helix-turn-helix transcriptional regulator Machinery gene
  SPJ_RS02715 (SPJ_0540) metE 513672..515921 (+) 2250 WP_000108205.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  SPJ_RS02720 (SPJ_0541) metF 515985..516851 (+) 867 WP_000089976.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9669.26 Da        Isoelectric Point: 4.8603

>NTDB_id=29753 SPJ_RS02710 WP_012677043.1 513145..513411(+) (HI0659) [Streptococcus pneumoniae JJA]
MEGCLSELFSKEEILESDMRVAIMSELIEARHEQGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVLASLGKILAV
VRLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=29753 SPJ_RS02710 WP_012677043.1 513145..513411(+) (HI0659) [Streptococcus pneumoniae JJA]
TTGGAAGGATGTCTATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATTATGAGCGAGTT
GATTGAAGCTAGACATGAACAAGGAATCAGTCAGAAAAAGCTAGAGGAACTCAGTGGAGTGAGTCAGCCTGTTATAGCTA
GGATGGAGACAGGTAAGACTAGTCCACAGTTGGACACAGTCTTAAAAGTCCTAGCTAGTCTAGGAAAGATACTAGCAGTC
GTCCGACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

59.74

87.5

0.523

Multiple sequence alignment