Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   EQH20_RS08175 Genome accession   NZ_CP035260
Coordinates   1633740..1634450 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A0H2URH4
Organism   Streptococcus pneumoniae strain TVO_1901925     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1628740..1639450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH20_RS08160 (EQH20_08625) - 1629281..1629529 (-) 249 WP_000364990.1 YneF family protein -
  EQH20_RS08165 (EQH20_08630) treC 1629785..1631410 (-) 1626 WP_061647433.1 alpha,alpha-phosphotrehalase -
  EQH20_RS08170 (EQH20_08640) treP 1631588..1633555 (-) 1968 WP_061647434.1 PTS system trehalose-specific EIIBC component -
  EQH20_RS08175 (EQH20_08645) treR 1633740..1634450 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  EQH20_RS08180 (EQH20_08650) - 1634606..1635882 (+) 1277 WP_372986069.1 ISL3 family transposase -
  EQH20_RS08185 (EQH20_08655) - 1636007..1636933 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein -
  EQH20_RS08190 (EQH20_08660) amiE 1636944..1638011 (-) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  EQH20_RS08195 (EQH20_08665) amiD 1638020..1638946 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=297466 EQH20_RS08175 WP_000760673.1 1633740..1634450(+) (treR) [Streptococcus pneumoniae strain TVO_1901925]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=297466 EQH20_RS08175 WP_000760673.1 1633740..1634450(+) (treR) [Streptococcus pneumoniae strain TVO_1901925]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTAATTCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAGAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2URH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593