Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | BPET_RS20150 | Genome accession | NC_010170 |
| Coordinates | 4187079..4188395 (-) | Length | 438 a.a. |
| NCBI ID | WP_041863098.1 | Uniprot ID | - |
| Organism | Bordetella petrii | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4182079..4193395
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BPET_RS20130 (Bpet3967) | phnC | 4182626..4183396 (+) | 771 | WP_012250857.1 | phosphonate ABC transporter ATP-binding protein | - |
| BPET_RS20135 (Bpet3968) | phnE | 4183384..4184256 (+) | 873 | WP_012250858.1 | phosphonate ABC transporter, permease protein PhnE | - |
| BPET_RS20140 (Bpet3969) | phnE | 4184253..4185077 (+) | 825 | WP_012250859.1 | phosphonate ABC transporter, permease protein PhnE | - |
| BPET_RS20145 (Bpet3970) | - | 4185393..4187039 (+) | 1647 | WP_012250860.1 | CYTH and CHAD domain-containing protein | - |
| BPET_RS20150 (Bpet3971) | pilA | 4187079..4188395 (-) | 1317 | WP_041863098.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| BPET_RS20155 (Bpet3972) | rsmD | 4188475..4189056 (+) | 582 | WP_041863099.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| BPET_RS20160 (Bpet3973) | coaD | 4189115..4189627 (+) | 513 | WP_012250863.1 | pantetheine-phosphate adenylyltransferase | - |
| BPET_RS20165 (Bpet3974) | - | 4189685..4189936 (+) | 252 | WP_012250864.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| BPET_RS20170 (Bpet3975) | - | 4189933..4191138 (+) | 1206 | WP_012250865.1 | benzoate/H(+) symporter BenE family transporter | - |
| BPET_RS20175 (Bpet3976) | - | 4191420..4191806 (-) | 387 | WP_012250866.1 | MOSC N-terminal beta barrel domain-containing protein | - |
Sequence
Protein
Download Length: 438 a.a. Molecular weight: 44675.88 Da Isoelectric Point: 4.9678
>NTDB_id=29746 BPET_RS20150 WP_041863098.1 4187079..4188395(-) (pilA) [Bordetella petrii]
MFRFFKKKSPPATPAQPDAAPQADAPAADAPASAPAPAAPPPDASTQDVAERDAAARAPAAEGMPAAMPAAVPVESGPEA
APAAAADEPVAEPPPALATAAEPAAAPAAPAVAETPVVAETSVAPPAGAAAEPAKKTSWLGRLKQGLSRTGQSLGGLFVG
VKVDENLFEELESALIMADAGLEATEQLLTALRARVRKERIENPAQVKQALRQVLADHLRPLERQFDLRRASPLVVMIAG
VNGAGKTTSIGKLAHTFQRQGASVLLAAGDIFRAAAREQLIEWGSRNNVSVIAQEGGDPAAVAFDAVNAGRARGAGVVMV
DTAGRLPTQLHLMEELKKIRRVIGKADGAAPHEVLLVVDGNTGQNALAQIRAFDAAIGLTGLVVTKLDGTAKGGTLAAVA
AGSQGVRPVPVYWIGVGEGMEDLQPFVADEFAGALLAD
MFRFFKKKSPPATPAQPDAAPQADAPAADAPASAPAPAAPPPDASTQDVAERDAAARAPAAEGMPAAMPAAVPVESGPEA
APAAAADEPVAEPPPALATAAEPAAAPAAPAVAETPVVAETSVAPPAGAAAEPAKKTSWLGRLKQGLSRTGQSLGGLFVG
VKVDENLFEELESALIMADAGLEATEQLLTALRARVRKERIENPAQVKQALRQVLADHLRPLERQFDLRRASPLVVMIAG
VNGAGKTTSIGKLAHTFQRQGASVLLAAGDIFRAAAREQLIEWGSRNNVSVIAQEGGDPAAVAFDAVNAGRARGAGVVMV
DTAGRLPTQLHLMEELKKIRRVIGKADGAAPHEVLLVVDGNTGQNALAQIRAFDAAIGLTGLVVTKLDGTAKGGTLAAVA
AGSQGVRPVPVYWIGVGEGMEDLQPFVADEFAGALLAD
Nucleotide
Download Length: 1317 bp
>NTDB_id=29746 BPET_RS20150 WP_041863098.1 4187079..4188395(-) (pilA) [Bordetella petrii]
ATGTTCCGCTTCTTCAAGAAAAAATCCCCGCCCGCCACGCCCGCGCAGCCCGACGCCGCGCCTCAGGCAGACGCGCCCGC
CGCCGATGCGCCGGCTTCCGCGCCCGCGCCAGCCGCGCCGCCGCCCGATGCTTCGACCCAGGACGTCGCCGAGCGCGATG
CGGCAGCCCGGGCGCCGGCCGCCGAGGGCATGCCCGCCGCAATGCCGGCCGCCGTCCCCGTCGAATCCGGGCCAGAAGCT
GCGCCTGCCGCTGCGGCGGACGAGCCTGTAGCCGAGCCACCGCCAGCGTTGGCAACGGCTGCCGAGCCCGCCGCCGCGCC
GGCCGCGCCCGCCGTGGCGGAAACGCCTGTCGTGGCGGAAACGTCCGTCGCGCCGCCAGCCGGCGCTGCTGCCGAGCCCG
CCAAAAAAACCTCGTGGCTGGGCCGGCTCAAGCAGGGCTTGTCGCGCACCGGGCAGAGCCTGGGCGGCCTGTTCGTGGGC
GTCAAGGTCGACGAGAATCTGTTCGAAGAACTCGAATCGGCGCTCATCATGGCCGACGCCGGGCTCGAAGCCACCGAACA
ACTGCTGACCGCATTGCGCGCGCGCGTGCGCAAAGAACGCATTGAAAATCCGGCCCAGGTGAAGCAGGCCCTGCGCCAGG
TGCTGGCCGATCATCTGCGCCCGCTCGAACGCCAGTTCGACCTGCGCCGCGCCAGCCCGCTGGTGGTGATGATTGCGGGC
GTGAACGGCGCCGGCAAGACCACCTCCATCGGCAAGCTGGCGCATACGTTCCAGCGCCAGGGCGCCAGCGTGCTGCTGGC
CGCCGGCGACATCTTCCGCGCGGCCGCGCGTGAACAACTGATTGAATGGGGCAGCCGCAACAACGTCAGCGTCATTGCCC
AGGAAGGCGGCGATCCGGCCGCCGTGGCGTTCGACGCGGTCAATGCGGGCCGCGCGCGCGGCGCGGGCGTGGTCATGGTG
GATACGGCCGGCCGCCTGCCCACGCAGCTGCACCTGATGGAAGAGCTGAAGAAAATCCGCCGCGTCATCGGCAAGGCCGA
CGGCGCCGCGCCGCACGAAGTGCTGCTGGTCGTCGACGGCAATACCGGCCAGAACGCGCTGGCGCAGATTCGTGCTTTCG
ATGCCGCCATCGGCCTGACGGGCCTGGTGGTCACCAAGCTGGACGGCACGGCCAAGGGCGGCACGCTGGCCGCGGTGGCC
GCCGGCAGCCAGGGCGTGCGTCCGGTGCCGGTGTATTGGATCGGCGTGGGCGAAGGCATGGAAGACCTGCAGCCCTTCGT
GGCCGACGAATTCGCGGGCGCTTTGCTGGCCGATTAG
ATGTTCCGCTTCTTCAAGAAAAAATCCCCGCCCGCCACGCCCGCGCAGCCCGACGCCGCGCCTCAGGCAGACGCGCCCGC
CGCCGATGCGCCGGCTTCCGCGCCCGCGCCAGCCGCGCCGCCGCCCGATGCTTCGACCCAGGACGTCGCCGAGCGCGATG
CGGCAGCCCGGGCGCCGGCCGCCGAGGGCATGCCCGCCGCAATGCCGGCCGCCGTCCCCGTCGAATCCGGGCCAGAAGCT
GCGCCTGCCGCTGCGGCGGACGAGCCTGTAGCCGAGCCACCGCCAGCGTTGGCAACGGCTGCCGAGCCCGCCGCCGCGCC
GGCCGCGCCCGCCGTGGCGGAAACGCCTGTCGTGGCGGAAACGTCCGTCGCGCCGCCAGCCGGCGCTGCTGCCGAGCCCG
CCAAAAAAACCTCGTGGCTGGGCCGGCTCAAGCAGGGCTTGTCGCGCACCGGGCAGAGCCTGGGCGGCCTGTTCGTGGGC
GTCAAGGTCGACGAGAATCTGTTCGAAGAACTCGAATCGGCGCTCATCATGGCCGACGCCGGGCTCGAAGCCACCGAACA
ACTGCTGACCGCATTGCGCGCGCGCGTGCGCAAAGAACGCATTGAAAATCCGGCCCAGGTGAAGCAGGCCCTGCGCCAGG
TGCTGGCCGATCATCTGCGCCCGCTCGAACGCCAGTTCGACCTGCGCCGCGCCAGCCCGCTGGTGGTGATGATTGCGGGC
GTGAACGGCGCCGGCAAGACCACCTCCATCGGCAAGCTGGCGCATACGTTCCAGCGCCAGGGCGCCAGCGTGCTGCTGGC
CGCCGGCGACATCTTCCGCGCGGCCGCGCGTGAACAACTGATTGAATGGGGCAGCCGCAACAACGTCAGCGTCATTGCCC
AGGAAGGCGGCGATCCGGCCGCCGTGGCGTTCGACGCGGTCAATGCGGGCCGCGCGCGCGGCGCGGGCGTGGTCATGGTG
GATACGGCCGGCCGCCTGCCCACGCAGCTGCACCTGATGGAAGAGCTGAAGAAAATCCGCCGCGTCATCGGCAAGGCCGA
CGGCGCCGCGCCGCACGAAGTGCTGCTGGTCGTCGACGGCAATACCGGCCAGAACGCGCTGGCGCAGATTCGTGCTTTCG
ATGCCGCCATCGGCCTGACGGGCCTGGTGGTCACCAAGCTGGACGGCACGGCCAAGGGCGGCACGCTGGCCGCGGTGGCC
GCCGGCAGCCAGGGCGTGCGTCCGGTGCCGGTGTATTGGATCGGCGTGGGCGAAGGCATGGAAGACCTGCAGCCCTTCGT
GGCCGACGAATTCGCGGGCGCTTTGCTGGCCGATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
48.98 |
100 |
0.493 |