Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   EQH20_RS05075 Genome accession   NZ_CP035260
Coordinates   1033454..1034524 (+) Length   356 a.a.
NCBI ID   WP_238124921.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901925     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1028454..1039524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH20_RS05060 (EQH20_05355) ylqF 1029687..1030538 (+) 852 WP_000201317.1 ribosome biogenesis GTPase YlqF -
  EQH20_RS05065 (EQH20_05360) - 1030525..1031304 (+) 780 WP_000201133.1 ribonuclease HII -
  EQH20_RS05070 (EQH20_05365) - 1031320..1032870 (+) 1551 WP_000392559.1 ClC family H(+)/Cl(-) exchange transporter -
  EQH20_RS05075 (EQH20_05370) xerS 1033454..1034524 (+) 1071 WP_238124921.1 tyrosine recombinase XerS Machinery gene
  EQH20_RS05080 (EQH20_05375) - 1034591..1035580 (-) 990 WP_000873987.1 lipoate--protein ligase -
  EQH20_RS05085 (EQH20_05380) lpdA 1035644..1037347 (-) 1704 WP_001162691.1 dihydrolipoyl dehydrogenase -
  EQH20_RS05090 (EQH20_05385) - 1037393..1038436 (-) 1044 WP_000752699.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41230.37 Da        Isoelectric Point: 9.7561

>NTDB_id=297439 EQH20_RS05075 WP_238124921.1 1033454..1034524(+) (xerS) [Streptococcus pneumoniae strain TVO_1901925]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLKSGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLFEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=297439 EQH20_RS05075 WP_238124921.1 1033454..1034524(+) (xerS) [Streptococcus pneumoniae strain TVO_1901925]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTGGCTGTGCCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGA
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAAGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATTTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTGCGTGTAACACCCCATAAACTGCGCCATACGCTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCCAGCACACAAGTCACTGACCTCTATACCCATATTGTTAATGA
TGAACAAAAGAATGCTCTAGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)

Phage integrase family (Phage_integrase)

(188-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

99.438

100

0.994