Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BPET_RS16015 Genome accession   NC_010170
Coordinates   3317983..3319344 (-) Length   453 a.a.
NCBI ID   WP_012250061.1    Uniprot ID   -
Organism   Bordetella petrii     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3312983..3324344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPET_RS15990 - 3313175..3313441 (+) 267 WP_041862984.1 type B 50S ribosomal protein L31 -
  BPET_RS15995 (Bpet3153) - 3313562..3315292 (+) 1731 WP_012250057.1 glycosyltransferase family 39 protein -
  BPET_RS16000 (Bpet3154) - 3315289..3316698 (+) 1410 WP_012250058.1 MATE family efflux transporter -
  BPET_RS16005 (Bpet3155) - 3316677..3316904 (-) 228 WP_012250059.1 hypothetical protein -
  BPET_RS16010 (Bpet3156) - 3317137..3317919 (-) 783 WP_012250060.1 sulfite exporter TauE/SafE family protein -
  BPET_RS16015 (Bpet3157) radA 3317983..3319344 (-) 1362 WP_012250061.1 DNA repair protein RadA Machinery gene
  BPET_RS16020 (Bpet3158) - 3319498..3321246 (+) 1749 WP_012250062.1 VWA domain-containing protein -
  BPET_RS16025 (Bpet3159) - 3321249..3321881 (+) 633 WP_231852602.1 RNA polymerase sigma factor -
  BPET_RS16030 (Bpet3160) - 3321878..3322549 (+) 672 WP_012250064.1 hypothetical protein -
  BPET_RS16035 (Bpet3161) - 3322573..3323289 (-) 717 WP_012250065.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48068.16 Da        Isoelectric Point: 7.2146

>NTDB_id=29743 BPET_RS16015 WP_012250061.1 3317983..3319344(-) (radA) [Bordetella petrii]
MAKPRTVYVCAECGGTTPKWQGKCPHCAAWNTLEETVESASPAAAAHRYAPLASSSPVRSLADIEARETPRQPTGLDEFD
RVLGGGLVAGAVVLIGGDPGIGKSTLLLQALATMSAHSRVLYVTGEESAEQVALRARRLGLQTGNVNLLAEIRLEAIQAA
VSEQQPAVAVIDSIQTLYSGELTAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHDQQVAGSCVMATQEGTRPLLVEIQALVDSSHAPN
PKRLTVGLEGNRLAMLLAVLHRHAGVSTYDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDRPLPRGLIAFGEVGLAGE
IRPAPRGQERLREAAKLGFSTALIPKANAPRQPIEGLEIWAVDRLDAALDKLR

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=29743 BPET_RS16015 WP_012250061.1 3317983..3319344(-) (radA) [Bordetella petrii]
ATGGCCAAGCCTCGAACCGTCTACGTCTGCGCCGAATGCGGCGGCACCACCCCCAAATGGCAGGGCAAATGCCCGCATTG
CGCCGCCTGGAACACCCTGGAAGAAACCGTTGAATCCGCCAGCCCGGCCGCCGCCGCGCACCGCTACGCGCCGCTGGCCA
GCTCCAGCCCGGTGCGCAGCCTGGCCGACATCGAGGCCCGCGAAACGCCGCGCCAGCCCACGGGGCTCGACGAGTTCGAC
CGCGTGCTGGGCGGCGGCCTGGTGGCCGGCGCCGTGGTTCTCATCGGCGGCGACCCCGGCATCGGCAAGTCCACGCTGCT
GCTGCAGGCCCTGGCCACCATGTCGGCCCACAGCCGCGTGCTGTATGTCACCGGCGAAGAATCCGCCGAGCAGGTGGCGC
TGCGCGCTCGCCGCCTGGGCCTGCAGACCGGCAATGTGAACCTGCTGGCCGAGATCCGCCTGGAAGCCATCCAGGCCGCG
GTGTCCGAACAACAGCCGGCCGTGGCGGTCATCGATTCCATCCAGACGCTGTACAGCGGCGAGCTCACCGCCGCGCCCGG
CTCGGTCTCGCAGGTGCGCGAATGCGCGGCCCAGCTCACCCGCCTGGCCAAGCAGACCGGCATCGCCATCGTGATGATCG
GGCACGTCACCAAAGACGGCGCGCTGGCCGGGCCGCGCGTGCTCGAGCACATCGTCGACACCGTGCTGTATTTCGAGGGC
GATACCCATTCGTCGTTCCGCCTGGTGCGGGCCTTCAAGAACCGCTTCGGGGCCGTCAACGAACTGGGCGTGTTCGCCAT
GACCGATCGCGGCCTGCGCGGCGTGGCCAACCCGTCGGCGCTGTTCCTGTCGCAGCACGATCAACAGGTGGCGGGGTCGT
GTGTCATGGCCACGCAAGAAGGCACGCGCCCGCTGCTGGTCGAGATCCAAGCACTGGTCGACAGTTCGCACGCGCCCAAT
CCCAAGCGCCTGACGGTGGGCCTGGAGGGCAATCGCCTGGCCATGCTGCTGGCCGTGCTGCACCGGCACGCGGGCGTATC
CACCTACGACCAGGATGTCTTCGTCAACGCGGTGGGTGGGGTGCGCATCACCGAACCCGCGGCCGACCTGCCGGTATTGC
TGGCCATCATGTCGTCGCTGCGCGACCGGCCCCTGCCGCGCGGATTGATCGCGTTCGGCGAAGTCGGCCTGGCCGGCGAG
ATCCGTCCGGCGCCGCGCGGGCAGGAGCGCTTGCGCGAAGCCGCCAAGCTGGGCTTCAGCACGGCGCTCATTCCCAAGGC
CAATGCCCCGCGGCAGCCCATCGAGGGCCTGGAGATCTGGGCGGTCGACCGCCTGGACGCCGCGCTGGACAAGCTGCGAT
GA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(82-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.342

100

0.497
  radA Streptococcus mitis NCTC 12261

46.578

100

0.466
  radA Streptococcus pneumoniae D39

48.826

94.04

0.459
  radA Streptococcus pneumoniae TIGR4

48.826

94.04

0.459
  radA Streptococcus mitis SK321

48.826

94.04

0.459
  radA Streptococcus pneumoniae R6

48.826

94.04

0.459
  radA Streptococcus pneumoniae Rx1

48.826

94.04

0.459

Multiple sequence alignment