Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   EQH20_RS00190 Genome accession   NZ_CP035260
Coordinates   36164..36934 (+) Length   256 a.a.
NCBI ID   WP_000616164.1    Uniprot ID   Q97TA7
Organism   Streptococcus pneumoniae strain TVO_1901925     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 31164..41934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH20_RS00170 (EQH20_00185) - 33172..33609 (+) 438 WP_000076470.1 CoA-binding protein -
  EQH20_RS00175 - 33650..33820 (+) 171 WP_225791119.1 hypothetical protein -
  EQH20_RS00180 (EQH20_00190) - 33839..34849 (-) 1011 WP_050203163.1 YeiH family protein -
  EQH20_RS00185 (EQH20_00195) - 34998..36167 (+) 1170 WP_000366342.1 pyridoxal phosphate-dependent aminotransferase -
  EQH20_RS00190 (EQH20_00200) recO 36164..36934 (+) 771 WP_000616164.1 DNA repair protein RecO Machinery gene
  EQH20_RS00195 (EQH20_00205) plsX 36931..37923 (+) 993 WP_000717458.1 phosphate acyltransferase PlsX -
  EQH20_RS00200 (EQH20_00210) - 37929..38162 (+) 234 WP_000136447.1 acyl carrier protein -
  EQH20_RS00205 (EQH20_00215) - 38199..38498 (+) 300 Protein_34 transposase family protein -
  EQH20_RS00210 (EQH20_00220) blpU 38701..38931 (+) 231 WP_001093075.1 bacteriocin-like peptide BlpU -
  EQH20_RS10195 - 38934..39059 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  EQH20_RS00215 (EQH20_00225) comA 39646..41799 (+) 2154 WP_000668301.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29787.35 Da        Isoelectric Point: 5.8959

>NTDB_id=297397 EQH20_RS00190 WP_000616164.1 36164..36934(+) (recO) [Streptococcus pneumoniae strain TVO_1901925]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=297397 EQH20_RS00190 WP_000616164.1 36164..36934(+) (recO) [Streptococcus pneumoniae strain TVO_1901925]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97TA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992