Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SPJ_RS00275 Genome accession   NC_012466
Coordinates   43701..44471 (+) Length   256 a.a.
NCBI ID   WP_000616164.1    Uniprot ID   Q97TA7
Organism   Streptococcus pneumoniae JJA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 38701..49471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPJ_RS00260 (SPJ_0057) - 40476..40913 (+) 438 WP_000076479.1 CoA-binding protein -
  SPJ_RS00265 (SPJ_0058) - 41376..42386 (-) 1011 WP_000009143.1 YeiH family protein -
  SPJ_RS00270 (SPJ_0059) - 42535..43704 (+) 1170 WP_000366378.1 pyridoxal phosphate-dependent aminotransferase -
  SPJ_RS00275 (SPJ_0060) recO 43701..44471 (+) 771 WP_000616164.1 DNA repair protein RecO Machinery gene
  SPJ_RS00280 (SPJ_0061) plsX 44468..45460 (+) 993 WP_000717458.1 phosphate acyltransferase PlsX -
  SPJ_RS00285 (SPJ_0062) - 45466..45699 (+) 234 WP_000136447.1 acyl carrier protein -
  SPJ_RS00290 (SPJ_0063) - 45745..46035 (+) 291 Protein_47 transposase family protein -
  SPJ_RS00295 (SPJ_0064) blpU 46238..46468 (+) 231 WP_001093075.1 bacteriocin-like peptide BlpU -
  SPJ_RS13510 (SPJ_0065) - 46471..46596 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  SPJ_RS13160 (SPJ_0066) - 47004..47198 (+) 195 WP_000756776.1 hypothetical protein -
  SPJ_RS00310 (SPJ_0067) comR 47219..48112 (+) 894 WP_000343888.1 XRE family transcriptional regulator Regulator
  SPJ_RS00315 (SPJ_0068) - 48655..48951 (+) 297 WP_000837726.1 uberolysin/carnocyclin family circular bacteriocin -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29787.35 Da        Isoelectric Point: 5.8959

>NTDB_id=29730 SPJ_RS00275 WP_000616164.1 43701..44471(+) (recO) [Streptococcus pneumoniae JJA]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=29730 SPJ_RS00275 WP_000616164.1 43701..44471(+) (recO) [Streptococcus pneumoniae JJA]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97TA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992

Multiple sequence alignment