Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   SUB_RS08410 Genome accession   NC_012004
Coordinates   1670106..1670558 (-) Length   150 a.a.
NCBI ID   WP_015911983.1    Uniprot ID   B9DVX8
Organism   Streptococcus uberis 0140J     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1665106..1675558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SUB_RS08395 (SUB1687) - 1665815..1666336 (+) 522 WP_015911980.1 hypothetical protein -
  SUB_RS08400 (SUB1688) - 1666620..1668404 (-) 1785 WP_015911981.1 ABC transporter ATP-binding protein -
  SUB_RS08405 (SUB1689) - 1668404..1670113 (-) 1710 WP_015911982.1 ABC transporter ATP-binding protein -
  SUB_RS08410 (SUB1690) rcrR 1670106..1670558 (-) 453 WP_015911983.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  SUB_RS08415 (SUB1691) - 1670746..1671762 (+) 1017 WP_015911984.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  SUB_RS08420 (SUB1692) galU 1671792..1672706 (+) 915 WP_015911985.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  SUB_RS08425 (SUB1693) - 1672735..1673409 (-) 675 WP_015911986.1 rhomboid family intramembrane serine protease -
  SUB_RS08430 (SUB1694) - 1673406..1673933 (-) 528 WP_015911987.1 5-formyltetrahydrofolate cyclo-ligase -
  SUB_RS08435 (SUB1695) - 1674051..1675409 (+) 1359 WP_015911988.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 17652.36 Da        Isoelectric Point: 7.4317

>NTDB_id=29715 SUB_RS08410 WP_015911983.1 1670106..1670558(-) (rcrR) [Streptococcus uberis 0140J]
MSRIIADLRELTHQIEQISEEVARKYHIDHLAGPQGHVLIYLDKHQNQEIYVKDIENALCISKSVASNLVKRMEKNGFID
IIPSQTDKRYKQVVITDKGLEKLPLVKECRKDIENYFFKEITREEFLTVRKVIDQLKQNMLDYKKGEDHA

Nucleotide


Download         Length: 453 bp        

>NTDB_id=29715 SUB_RS08410 WP_015911983.1 1670106..1670558(-) (rcrR) [Streptococcus uberis 0140J]
ATGTCAAGGATTATTGCTGATTTAAGAGAGTTAACCCATCAGATAGAACAAATTAGTGAAGAGGTTGCTCGAAAGTATCA
TATCGACCATTTAGCTGGACCTCAAGGGCATGTCCTTATTTATTTGGATAAGCATCAAAATCAAGAAATATATGTTAAGG
ATATTGAAAATGCTCTTTGTATTTCAAAATCCGTAGCTAGTAATCTCGTTAAGCGAATGGAAAAAAATGGCTTCATTGAT
ATCATTCCTTCTCAAACAGATAAACGCTATAAACAAGTTGTTATTACGGACAAAGGCCTTGAAAAATTGCCACTGGTAAA
AGAGTGTCGAAAAGACATCGAGAATTATTTCTTTAAGGAAATCACTAGAGAGGAATTTCTTACTGTTCGTAAAGTTATCG
ATCAATTGAAACAAAATATGCTAGATTATAAAAAAGGAGAAGATCATGCTTAA

Domains

Predicted by InterProScan.

MarR family (MarR)

(34-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9DVX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

42.857

93.333

0.4