Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EQH26_RS05685 Genome accession   NZ_CP035254
Coordinates   1128918..1130585 (-) Length   555 a.a.
NCBI ID   WP_000923577.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901932     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1123918..1135585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH26_RS10855 (EQH26_06000) - 1124202..1125004 (-) 803 Protein_1134 IS5 family transposase -
  EQH26_RS05660 (EQH26_06005) - 1125024..1125314 (-) 291 WP_000590558.1 PTS sugar transporter subunit IIB -
  EQH26_RS05665 (EQH26_06010) - 1125352..1125828 (-) 477 WP_000242186.1 PTS sugar transporter subunit IIA -
  EQH26_RS05670 (EQH26_06015) - 1126008..1126205 (+) 198 WP_000693362.1 hypothetical protein -
  EQH26_RS05675 (EQH26_06020) lepA 1126286..1128109 (-) 1824 WP_001047212.1 translation elongation factor 4 -
  EQH26_RS05680 (EQH26_06025) - 1128188..1128916 (-) 729 WP_000133326.1 metallophosphoesterase family protein -
  EQH26_RS05685 (EQH26_06030) recN 1128918..1130585 (-) 1668 WP_000923577.1 DNA repair protein RecN Machinery gene
  EQH26_RS05690 (EQH26_06035) - 1130592..1131023 (-) 432 WP_001034412.1 arginine repressor -
  EQH26_RS05695 (EQH26_06040) - 1131016..1131831 (-) 816 WP_001041079.1 TlyA family RNA methyltransferase -
  EQH26_RS05700 (EQH26_06045) - 1131824..1132699 (-) 876 WP_000743809.1 polyprenyl synthetase family protein -
  EQH26_RS05705 (EQH26_06050) - 1132696..1132908 (-) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  EQH26_RS05710 (EQH26_06055) xseA 1132886..1134226 (-) 1341 WP_000417446.1 exodeoxyribonuclease VII large subunit -
  EQH26_RS05715 (EQH26_06060) udk 1134354..1134992 (-) 639 WP_001181378.1 uridine kinase -
  EQH26_RS05720 (EQH26_06070) - 1135100..1135402 (-) 303 WP_000985093.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62782.18 Da        Isoelectric Point: 4.6517

>NTDB_id=296834 EQH26_RS05685 WP_000923577.1 1128918..1130585(-) (recN) [Streptococcus pneumoniae strain TVO_1901932]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDSEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=296834 EQH26_RS05685 WP_000923577.1 1128918..1130585(-) (recN) [Streptococcus pneumoniae strain TVO_1901932]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCTATGAATGACATGGAAAGTGTCGAAGAGTATGATTCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTGATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCTAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCCCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATGAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTTTTGACGGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44