Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   SUB_RS05605 Genome accession   NC_012004
Coordinates   1092344..1092826 (-) Length   160 a.a.
NCBI ID   WP_012658603.1    Uniprot ID   B9DUN0
Organism   Streptococcus uberis 0140J     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1087344..1097826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SUB_RS05585 (SUB1112) budA 1087379..1088098 (-) 720 WP_012658599.1 acetolactate decarboxylase -
  SUB_RS05590 (SUB1113) alsS 1088110..1089786 (-) 1677 WP_012658600.1 acetolactate synthase AlsS -
  SUB_RS05595 (SUB1114) - 1089894..1091135 (-) 1242 WP_012658601.1 tetratricopeptide repeat protein -
  SUB_RS05600 (SUB1115) - 1091125..1092306 (-) 1182 WP_012658602.1 AI-2E family transporter -
  SUB_RS05605 (SUB1116) mutX 1092344..1092826 (-) 483 WP_012658603.1 NUDIX hydrolase Machinery gene
  SUB_RS05610 (SUB1117) - 1092909..1093916 (+) 1008 WP_012658604.1 lactonase family protein -
  SUB_RS05615 (SUB1118) - 1093977..1094168 (+) 192 WP_012658605.1 hypothetical protein -
  SUB_RS05625 (SUB1119) rfbB 1094389..1095435 (-) 1047 WP_012658606.1 dTDP-glucose 4,6-dehydratase -
  SUB_RS05630 (SUB1120) - 1095482..1096075 (-) 594 WP_012658607.1 dTDP-4-dehydrorhamnose 3,5-epimerase family protein -
  SUB_RS05635 (SUB1121) rfbA 1096075..1096944 (-) 870 WP_012658608.1 glucose-1-phosphate thymidylyltransferase RfbA -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18941.26 Da        Isoelectric Point: 4.4518

>NTDB_id=29681 SUB_RS05605 WP_012658603.1 1092344..1092826(-) (mutX) [Streptococcus uberis 0140J]
MTKLATICYIDNGESLLLLHRNKKENDVHEGKWISVGGKLEEGETPEECAIREIYEETHLTVEKMDFRGIITFPEFTPGH
DWYTYVFKITGFSGDLISNEESREGTLEWVPYEQVLEKPTWEGDYEIFKWILEDRPFFSAKFHYNQANELIEKQVTFYQK

Nucleotide


Download         Length: 483 bp        

>NTDB_id=29681 SUB_RS05605 WP_012658603.1 1092344..1092826(-) (mutX) [Streptococcus uberis 0140J]
ATGACAAAATTAGCAACCATTTGTTACATTGATAACGGAGAGTCCCTTTTATTGTTGCATCGCAATAAAAAAGAGAATGA
CGTCCACGAAGGCAAATGGATCTCAGTAGGTGGTAAATTGGAAGAAGGTGAGACACCTGAGGAATGTGCCATTCGTGAAA
TCTATGAAGAAACACATTTAACCGTTGAAAAAATGGATTTTAGAGGCATTATTACCTTTCCAGAGTTTACGCCAGGACAT
GATTGGTATACCTATGTTTTTAAAATAACAGGTTTTTCAGGTGACTTGATTTCCAACGAAGAATCTCGAGAAGGAACATT
GGAGTGGGTTCCTTATGAACAAGTCTTAGAAAAACCAACTTGGGAAGGGGATTATGAAATCTTTAAATGGATTTTGGAAG
ACCGTCCATTTTTCTCAGCAAAGTTTCACTATAACCAAGCTAACGAATTAATCGAAAAACAGGTTACATTTTATCAAAAA
TAG

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(4-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9DUN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

66.038

99.375

0.656

Multiple sequence alignment