Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   EQH28_RS09400 Genome accession   NZ_CP035252
Coordinates   1835578..1836369 (+) Length   263 a.a.
NCBI ID   WP_000090699.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901934     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1830578..1841369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH28_RS09335 (EQH28_09875) - 1830600..1830854 (-) 255 WP_000275523.1 hypothetical protein -
  EQH28_RS09340 (EQH28_09880) - 1830855..1831076 (-) 222 WP_000771950.1 hypothetical protein -
  EQH28_RS09345 - 1831076..1831213 (-) 138 WP_000869368.1 hypothetical protein -
  EQH28_RS09350 (EQH28_09885) - 1831231..1832028 (-) 798 WP_001056933.1 ParB N-terminal domain-containing protein -
  EQH28_RS09355 - 1832095..1832238 (-) 144 WP_000389589.1 hypothetical protein -
  EQH28_RS09360 (EQH28_09890) - 1832357..1832548 (+) 192 WP_000834563.1 hypothetical protein -
  EQH28_RS09365 (EQH28_09900) - 1832943..1833263 (-) 321 WP_223687705.1 HTH domain-containing protein -
  EQH28_RS09370 (EQH28_09905) - 1833348..1833575 (-) 228 WP_001125554.1 helix-turn-helix transcriptional regulator -
  EQH28_RS09375 (EQH28_09910) - 1833648..1833854 (+) 207 WP_000133214.1 hypothetical protein -
  EQH28_RS09380 - 1834079..1834249 (-) 171 WP_000660185.1 hypothetical protein -
  EQH28_RS09385 (EQH28_09920) - 1834448..1834897 (+) 450 WP_001058908.1 hypothetical protein -
  EQH28_RS09390 - 1834888..1835055 (-) 168 WP_001005822.1 hypothetical protein -
  EQH28_RS09395 (EQH28_09925) - 1835130..1835405 (-) 276 WP_001094375.1 hypothetical protein -
  EQH28_RS09400 (EQH28_09930) irvR 1835578..1836369 (+) 792 WP_000090699.1 XRE family transcriptional regulator Regulator
  EQH28_RS09405 (EQH28_09935) - 1836371..1836571 (+) 201 WP_000064302.1 hypothetical protein -
  EQH28_RS09410 (EQH28_09940) - 1836739..1838166 (+) 1428 WP_000859012.1 recombinase family protein -
  EQH28_RS09415 (EQH28_09945) - 1838302..1839063 (-) 762 WP_001107758.1 SDR family NAD(P)-dependent oxidoreductase -
  EQH28_RS09420 (EQH28_09950) ytpR 1839096..1839725 (-) 630 WP_000578314.1 YtpR family tRNA-binding protein -
  EQH28_RS09425 (EQH28_09955) - 1839741..1840058 (-) 318 WP_000615767.1 thioredoxin family protein -
  EQH28_RS09430 (EQH28_09960) - 1840055..1840354 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  EQH28_RS09435 - 1840552..1840614 (-) 63 WP_219335288.1 hypothetical protein -
  EQH28_RS09440 (EQH28_09970) - 1840639..1840830 (-) 192 WP_000291826.1 cell wall-binding protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 29680.21 Da        Isoelectric Point: 4.4016

>NTDB_id=296744 EQH28_RS09400 WP_000090699.1 1835578..1836369(+) (irvR) [Streptococcus pneumoniae strain TVO_1901934]
MARGRGKLTPQDKEDMKVFSANLNSILSDRNCKQAELSRATGIPPSTLTGYVKGTSLPIPGNVQKIADFFGVPKSVLDPR
FITNNFMVNDSSSNTPQIQTIYDELEPPRQGKVLNYAKRQLKEQKNEEETKINEVSEAIRLYSYDYYDHPASAGTGQYLN
DVRVERIELPVDVDADFVIPIKGDSMEPDYHDGDLVFIQTSVDLNDGVIGVFNYNGDAYIKQLVIDEDQAYLHSLNPEYK
DMPITPDTDFRIIGEVVDLYREK

Nucleotide


Download         Length: 792 bp        

>NTDB_id=296744 EQH28_RS09400 WP_000090699.1 1835578..1836369(+) (irvR) [Streptococcus pneumoniae strain TVO_1901934]
ATGGCAAGAGGACGAGGGAAATTAACTCCTCAAGATAAAGAGGATATGAAAGTCTTTTCTGCAAATCTTAACTCAATTTT
ATCTGATAGAAATTGTAAACAAGCTGAGCTGTCTCGAGCAACAGGAATACCGCCTAGTACATTGACAGGGTATGTAAAAG
GAACTTCTTTGCCAATCCCTGGTAATGTTCAAAAAATTGCAGATTTTTTTGGAGTTCCTAAATCTGTATTAGATCCTAGA
TTTATAACTAATAATTTCATGGTCAATGACTCTTCTTCTAATACTCCCCAAATTCAAACCATCTACGACGAACTAGAACC
ACCTAGACAGGGCAAAGTCCTGAATTATGCAAAGAGGCAACTGAAAGAGCAAAAAAACGAAGAAGAAACGAAGATAAACG
AAGTATCAGAAGCTATTCGGCTCTACAGTTACGACTACTACGACCACCCAGCTTCCGCAGGTACAGGCCAGTATTTGAAT
GATGTACGAGTGGAACGGATTGAGTTACCAGTAGATGTTGATGCTGACTTTGTCATCCCCATCAAAGGTGACTCCATGGA
GCCTGACTACCACGATGGTGACCTGGTATTCATTCAGACAAGTGTAGATTTGAATGACGGAGTTATCGGAGTATTCAACT
ACAACGGCGATGCTTATATCAAGCAGCTTGTTATTGATGAAGACCAGGCTTACCTACATAGCCTAAACCCTGAATATAAA
GATATGCCAATTACACCAGACACCGACTTCCGAATTATCGGCGAAGTCGTGGATTTGTATAGGGAGAAATAA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(30-74)

Peptidase S24-like (Peptidase_S24)

(151-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

34

100

0.388

Multiple sequence alignment