Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   EQH28_RS05260 Genome accession   NZ_CP035252
Coordinates   1058145..1059215 (+) Length   356 a.a.
NCBI ID   WP_000817884.1    Uniprot ID   C1C7D0
Organism   Streptococcus pneumoniae strain TVO_1901934     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1053145..1064215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH28_RS05245 (EQH28_05585) ylqF 1054378..1055229 (+) 852 WP_000201315.1 ribosome biogenesis GTPase YlqF -
  EQH28_RS05250 (EQH28_05590) - 1055216..1055995 (+) 780 WP_000201099.1 ribonuclease HII -
  EQH28_RS05255 (EQH28_05595) - 1056011..1057561 (+) 1551 WP_000392544.1 ClC family H(+)/Cl(-) exchange transporter -
  EQH28_RS05260 (EQH28_05600) xerS 1058145..1059215 (+) 1071 WP_000817884.1 tyrosine recombinase XerS Machinery gene
  EQH28_RS05265 (EQH28_05605) - 1059288..1060277 (-) 990 WP_000873991.1 lipoate--protein ligase -
  EQH28_RS05270 (EQH28_05610) lpdA 1060341..1062044 (-) 1704 WP_001162695.1 dihydrolipoyl dehydrogenase -
  EQH28_RS05275 (EQH28_05615) - 1062090..1063133 (-) 1044 WP_000752697.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41144.18 Da        Isoelectric Point: 9.6220

>NTDB_id=296704 EQH28_RS05260 WP_000817884.1 1058145..1059215(+) (xerS) [Streptococcus pneumoniae strain TVO_1901934]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVSDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=296704 EQH28_RS05260 WP_000817884.1 1058145..1059215(+) (xerS) [Streptococcus pneumoniae strain TVO_1901934]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAACTGGCTGTGCCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAAGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTGCGTGTAACACCCCATAAACTGCGCCATACACTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCTAGCACACAAGTCACTGACCTCTATACCCATATTGTTAGTGA
TGAACAAAAGAATGCTCTGGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)

Phage integrase family (Phage_integrase)

(188-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1C7D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

99.719

100

0.997