Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EQH29_RS05475 Genome accession   NZ_CP035251
Coordinates   1102719..1104386 (-) Length   555 a.a.
NCBI ID   WP_000923586.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901935     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1097719..1109386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH29_RS05445 (EQH29_05775) - 1097960..1098761 (-) 802 Protein_1088 IS5 family transposase -
  EQH29_RS05450 (EQH29_05780) - 1098769..1099071 (-) 303 WP_000590570.1 PTS sugar transporter subunit IIB -
  EQH29_RS05455 (EQH29_05785) - 1099109..1099584 (-) 476 Protein_1090 PTS sugar transporter subunit IIA -
  EQH29_RS05460 - 1099764..1100006 (+) 243 WP_000693368.1 hypothetical protein -
  EQH29_RS05465 (EQH29_05795) lepA 1100087..1101910 (-) 1824 WP_001047220.1 translation elongation factor 4 -
  EQH29_RS05470 (EQH29_05800) - 1101989..1102717 (-) 729 WP_000133341.1 metallophosphoesterase family protein -
  EQH29_RS05475 (EQH29_05805) recN 1102719..1104386 (-) 1668 WP_000923586.1 DNA repair protein RecN Machinery gene
  EQH29_RS05480 (EQH29_05810) - 1104393..1104824 (-) 432 WP_001034412.1 arginine repressor -
  EQH29_RS05485 (EQH29_05815) - 1104817..1105632 (-) 816 WP_001041072.1 TlyA family RNA methyltransferase -
  EQH29_RS05490 (EQH29_05820) - 1105625..1106500 (-) 876 WP_000743813.1 polyprenyl synthetase family protein -
  EQH29_RS05495 (EQH29_05825) - 1106497..1106709 (-) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  EQH29_RS05500 (EQH29_05830) xseA 1106687..1108027 (-) 1341 WP_000417468.1 exodeoxyribonuclease VII large subunit -
  EQH29_RS05505 (EQH29_05835) udk 1108155..1108793 (-) 639 WP_001181378.1 uridine kinase -
  EQH29_RS05510 (EQH29_05845) - 1108901..1109203 (-) 303 WP_000985093.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62759.15 Da        Isoelectric Point: 4.6513

>NTDB_id=296587 EQH29_RS05475 WP_000923586.1 1102719..1104386(-) (recN) [Streptococcus pneumoniae strain TVO_1901935]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKERIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVHFSK
GKFSRGGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=296587 EQH29_RS05475 WP_000923586.1 1102719..1104386(-) (recN) [Streptococcus pneumoniae strain TVO_1901935]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGA
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCTATGAATGACATGGAAAGTGTCGAAGAGTATGATCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTGATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCATTTTAGTAAG
GGAAAATTCAGTCGTGGGGGAAATGAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACAGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44