Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   NMCC_RS05875 Genome accession   NC_010120
Coordinates   1100837..1102582 (-) Length   581 a.a.
NCBI ID   WP_012221673.1    Uniprot ID   -
Organism   Neisseria meningitidis 053442     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1095837..1107582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMCC_RS05855 (NMCC_1110) - 1096061..1096495 (+) 435 WP_002217157.1 hypothetical protein -
  NMCC_RS05860 (NMCC_1111) - 1096554..1096823 (-) 270 WP_002213508.1 HU family DNA-binding protein -
  NMCC_RS05865 (NMCC_1112) lon 1097005..1099455 (-) 2451 WP_012221671.1 endopeptidase La -
  NMCC_RS12345 - 1099555..1099731 (+) 177 WP_153309848.1 nitric oxide synthase -
  NMCC_RS05870 (NMCC_1113) - 1099706..1100809 (+) 1104 WP_002232479.1 methyltransferase -
  NMCC_RS05875 (NMCC_1114) recD 1100837..1102582 (-) 1746 WP_012221673.1 exodeoxyribonuclease V subunit alpha Machinery gene
  NMCC_RS05880 (NMCC_1115) lolD 1102649..1103344 (-) 696 WP_017628992.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  NMCC_RS05885 (NMCC_1116) - 1103337..1104584 (-) 1248 WP_002213503.1 lipoprotein-releasing ABC transporter permease subunit -
  NMCC_RS05895 (NMCC_1117) - 1104788..1105066 (+) 279 WP_002213502.1 hypothetical protein -
  NMCC_RS05900 (NMCC_1118) recR 1105122..1105739 (-) 618 WP_002232485.1 recombination mediator RecR -
  NMCC_RS05905 (NMCC_1119) - 1105806..1107344 (-) 1539 WP_012221676.1 SurA N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 62883.46 Da        Isoelectric Point: 5.9088

>NTDB_id=29653 NMCC_RS05875 WP_012221673.1 1100837..1102582(-) (recD) [Neisseria meningitidis 053442]
MERQTDEFAQAAARAAIRFLERYAGSGSEVLANCTERLFQALQNGHSFIRLSGGEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGTGSEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLA
LICGEDENLPNIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLRPPKMQAAFNPVYPLPFDVL
VIDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSHVRRKMNIPEHQAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPDFEPAFAMTVHKSQGSEYREVWLLPPSAAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGEETFRQAA
ATVKTRQTALGSMLERVFSQE

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=29653 NMCC_RS05875 WP_012221673.1 1100837..1102582(-) (recD) [Neisseria meningitidis 053442]
ATGGAACGGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGGTTTTTGGAACGCTATGCGGGTTCGGG
CAGCGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGTG
GCGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAGATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGAGGCAAAACCTCGCAAAATGGTTTCAAGGCACGGGCAGCGAAGGGCAGCGCGATGCCGCCGCCT
TGGCACTGTTGCAGTCTTTTATGGTGATTACCGGCGGACCCGGGACGGGTAAAACGACAACGGTTGCCAAACTGCTGGCG
CTGATTTGCGGTGAAGACGAAAATCTTCCCAACATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTGAAGCTGCGCCCGCCCAAAATGCAGGCGGCGTTCAACCCTGTTTACCCGCTGCCGTTTGACGTATTG
GTTATCGATGAAGCCTCTATGCTGGATACGGCATTGATGCTGCAACTTTTAAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGGGATGAAAACCAGCTCCCGTCCGTCGGAATAGGGGCGGTGCTGTCCGTTTTGTCACAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGCTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCACCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGAG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTCCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCCATGTACGCCGCAA
AATGAACATACCGGAACATCAGGCCTATTTCGCCGGAGAACCGATTATGATCAGACAGAACGACTACGCGCTTGAACTGT
TCAACGGCGACATCGGATTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGATTTCGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGCCGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCGAGGGAGAAGTTCGTATTCTTCGGCGGAGAAGAAACCTTCCGGCAAGCTGCC
GCCACTGTCAAAACGCGTCAGACGGCATTGGGCAGTATGCTCGAGCGGGTATTTTCACAAGAATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(494-548)

AAA domain (AAA_30)

(125-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

95.697

100

0.957

Multiple sequence alignment