Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SUB_RS00210 Genome accession   NC_012004
Coordinates   29783..30556 (+) Length   257 a.a.
NCBI ID   WP_012657592.1    Uniprot ID   B9DSQ8
Organism   Streptococcus uberis 0140J     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 24783..35556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SUB_RS09790 (SUB0018) mreD 25583..26083 (+) 501 WP_012657588.1 rod shape-determining protein MreD -
  SUB_RS00195 (SUB0019) pcsB 26179..27456 (+) 1278 WP_012657589.1 peptidoglycan hydrolase PcsB -
  SUB_RS00200 (SUB0020) - 27565..28524 (+) 960 WP_012657590.1 ribose-phosphate diphosphokinase -
  SUB_RS00205 (SUB0021) - 28615..29793 (+) 1179 WP_012657591.1 pyridoxal phosphate-dependent aminotransferase -
  SUB_RS00210 (SUB0022) recO 29783..30556 (+) 774 WP_012657592.1 DNA repair protein RecO Machinery gene
  SUB_RS00215 (SUB0023) plsX 30656..31663 (+) 1008 WP_012657593.1 phosphate acyltransferase PlsX -
  SUB_RS00220 (SUB0024) - 31656..31901 (+) 246 WP_012657594.1 phosphopantetheine-binding protein -
  SUB_RS00225 (SUB0025) purC 32047..32751 (+) 705 WP_012657595.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 30100.51 Da        Isoelectric Point: 6.4983

>NTDB_id=29628 SUB_RS00210 WP_012657592.1 29783..30556(+) (recO) [Streptococcus uberis 0140J]
METKKSLGLVLYNRNYREDDKLVKIFTETSGKRMFFVKNVGKSKLASVIQPLTIADFMMKLNEKGLSYIEDYNSVQNYPK
INQDLFKLSYASYLLALADAAISDNESDPHLFVFLKKTLDLMEEGLDYEVLTNIFEIQVLDRFGLHLNFNECVFCHRTGL
PFDFSHKYSGLLCPQHFHEDLHRSHLDPNVIYLLNQFQSIHFSDLNSISLKPEMKRKLRRFIDVLYDDYVGIHLKSKKFI
DDLDKWGDIMRTESNDS

Nucleotide


Download         Length: 774 bp        

>NTDB_id=29628 SUB_RS00210 WP_012657592.1 29783..30556(+) (recO) [Streptococcus uberis 0140J]
ATGGAAACTAAAAAAAGTTTAGGATTGGTTCTCTATAACAGAAATTACAGAGAAGATGACAAACTTGTCAAAATTTTTAC
TGAAACCTCTGGAAAAAGAATGTTCTTTGTCAAAAATGTGGGGAAATCAAAACTTGCCTCTGTCATACAACCATTAACCA
TTGCTGATTTTATGATGAAGTTGAATGAAAAAGGCTTATCTTACATTGAAGATTATAATAGTGTTCAGAACTATCCCAAA
ATTAATCAAGATTTATTTAAACTTTCATATGCTAGTTATCTCTTAGCATTAGCTGATGCAGCCATTTCTGATAATGAATC
TGATCCACATCTTTTTGTATTTTTGAAAAAAACCTTGGATTTGATGGAGGAAGGCTTGGATTACGAAGTTTTAACTAATA
TTTTTGAAATTCAGGTACTTGATCGCTTTGGACTTCATCTCAATTTTAATGAATGTGTTTTTTGTCATAGGACAGGGTTA
CCATTTGACTTTTCCCATAAATATTCAGGTCTTTTGTGCCCTCAACATTTTCATGAAGATCTTCACAGGAGTCATTTAGA
TCCAAACGTTATTTATTTATTAAATCAATTTCAATCCATTCACTTTTCTGATTTAAATAGCATTTCTTTAAAACCAGAAA
TGAAACGAAAACTCAGACGATTTATTGATGTTTTATATGATGATTATGTTGGTATCCATTTAAAAAGTAAAAAGTTTATT
GATGATTTAGACAAATGGGGAGATATTATGAGAACAGAGTCTAATGATTCCTGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9DSQ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

65.217

98.444

0.642

Multiple sequence alignment