Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DM992_RS10175 Genome accession   NZ_CP029824
Coordinates   2132565..2133941 (+) Length   458 a.a.
NCBI ID   WP_111016709.1    Uniprot ID   A0A2U9SMA8
Organism   Burkholderia sp. JP2-270     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2127565..2138941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DM992_RS10155 (DM992_10155) - 2128106..2129071 (+) 966 WP_111016706.1 DUF1853 family protein -
  DM992_RS10160 (DM992_10160) thiD 2129090..2129899 (-) 810 WP_111016707.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DM992_RS10165 (DM992_10165) lplT 2129958..2131265 (-) 1308 WP_111016708.1 lysophospholipid transporter LplT -
  DM992_RS10170 (DM992_10170) alr 2131483..2132553 (+) 1071 WP_105390452.1 alanine racemase -
  DM992_RS10175 (DM992_10175) radA 2132565..2133941 (+) 1377 WP_111016709.1 DNA repair protein RadA Machinery gene
  DM992_RS10180 (DM992_10180) - 2134088..2134354 (+) 267 WP_034184728.1 DUF2866 domain-containing protein -
  DM992_RS10185 (DM992_10185) - 2134521..2136452 (-) 1932 WP_111016710.1 ATP-binding cassette domain-containing protein -
  DM992_RS10190 (DM992_10190) - 2136589..2137068 (+) 480 WP_111016711.1 glutathione peroxidase -
  DM992_RS10195 (DM992_10195) cls 2137132..2138580 (-) 1449 WP_111016712.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48851.26 Da        Isoelectric Point: 6.7604

>NTDB_id=296234 DM992_RS10175 WP_111016709.1 2132565..2133941(+) (radA) [Burkholderia sp. JP2-270]
MAKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVAESPSAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQSLADIASERRALYISGEESAAQIALRAQRLALLDGGTPAAELQLLAEIQLEKIQ
AAIDAERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQIVPGSCVLVTQEGTRPLLVEIQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTAALIPKANAPKQPIDGLNVMAVERIEQAIDRVRDLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=296234 DM992_RS10175 WP_111016709.1 2132565..2133941(+) (radA) [Burkholderia sp. JP2-270]
GTGGCCAAACAGAAAACCGTCTACGTCTGCAGCGAGTGCGGCGGGCAGACCCCGAAGTGGCAGGGGCAGTGTCCGTCATG
CCAGGCCTGGAATACGCTGGTCGAATCGGTCGCCGAGTCGCCGTCGGCCCATCGTTTCCAGTCGCTCGCGAAGCGGGCGC
CCGTCCAGCGCCTCGTCGACATCGAAGCGGCCGACGTGCCGCGCTTCTCGACCGGCATCGGCGAATTCGACCGCGTGCTC
GGCGGCGGGCTGGTCCCCGGCGGCGTCGTGCTGATCGGCGGCGACCCGGGCATCGGCAAGTCGACGCTGCTGCTGCAGTC
GCTCGCGGACATCGCGAGCGAACGGCGCGCGCTCTACATCAGCGGCGAGGAATCGGCCGCGCAGATCGCGTTGCGCGCGC
AACGGCTTGCGCTGCTCGACGGCGGTACGCCGGCGGCCGAGCTGCAGCTGCTCGCCGAGATCCAGCTCGAAAAGATCCAG
GCCGCGATCGACGCGGAGCGGCCGGACGTGGCCGTGATCGACTCGATCCAGACCGTCTACTCGGAAGCGCTCACGTCGGC
ACCGGGCTCGGTCGCGCAGGTGCGCGAATGCGCGGCGCAGCTCACGCGCATCGCGAAACAGTCGGGCACCGCGATCATCA
TGGTCGGGCACGTGACGAAGGAGGGCAACCTGGCCGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTATTTC
GAGGGCGACACGCATTCGTCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGGTTCGGCGCGGTCAACGAACTCGGCGTGTT
CGCGATGACCGAGCGCGGGCTGCGCGGCGTCGCGAATCCGTCCGCGCTGTTCCTGTCGCAGCACGAGCAGATCGTGCCCG
GCTCGTGCGTGCTCGTCACGCAGGAAGGCACGCGCCCGCTGCTCGTCGAAATCCAGGCGCTGGTCGATACCGCGCACGTG
CCTAACCCGCGCCGGCTCGCGGTCGGCCTCGAACAGAACCGGCTCGCGATGCTGCTCGCGGTGCTGCACCGGCACGCGGG
CATCGCGTGCTTCGACCAGGACGTGTTCCTCAATGCAGTGGGCGGCGTGAAGATCACCGAGCCGGCCGCCGACCTCGCGG
TGCTGCTCGCGATCCATTCGTCGATGCGCAACAAGGCGTTGCCGAAGGGGCTGATCGTGTTCGGCGAAGTGGGGCTGGCG
GGCGAGATCCGGCCGTCCCCGCGCGGGCAGGAGCGGCTGCGCGAGGCGGCGAAGCTCGGTTTCACGGCCGCGCTGATCCC
GAAGGCGAATGCGCCGAAGCAGCCGATCGACGGGTTGAACGTGATGGCTGTCGAGCGGATCGAGCAGGCGATCGACCGCG
TGCGCGATCTCGAGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U9SMA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.353

100

0.5
  radA Streptococcus pneumoniae Rx1

46.855

100

0.472
  radA Streptococcus pneumoniae D39

46.855

100

0.472
  radA Streptococcus pneumoniae R6

46.855

100

0.472
  radA Streptococcus pneumoniae TIGR4

46.855

100

0.472
  radA Streptococcus mitis SK321

47.046

99.782

0.469
  radA Streptococcus mitis NCTC 12261

46.827

99.782

0.467

Multiple sequence alignment