Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DM558_RS12410 Genome accession   NZ_CP029822
Coordinates   2679257..2680618 (-) Length   453 a.a.
NCBI ID   WP_127164290.1    Uniprot ID   A0A451EP30
Organism   Entomomonas moraniae strain QZS01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2674257..2685618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DM558_RS12390 (DM558_12500) - 2674467..2675081 (+) 615 WP_127164286.1 hypothetical protein -
  DM558_RS12395 (DM558_12505) - 2675078..2675800 (-) 723 WP_164731460.1 DUF3142 domain-containing protein -
  DM558_RS12400 (DM558_12510) - 2675770..2677947 (-) 2178 WP_127164288.1 tol-pal system YbgF family protein -
  DM558_RS12405 (DM558_12515) - 2678059..2679255 (+) 1197 WP_127164289.1 MFS transporter -
  DM558_RS12410 (DM558_12520) radA 2679257..2680618 (-) 1362 WP_127164290.1 DNA repair protein RadA Machinery gene
  DM558_RS12415 (DM558_12525) mscL 2680722..2681141 (+) 420 WP_127164291.1 large-conductance mechanosensitive channel protein MscL -
  DM558_RS12420 (DM558_12530) - 2681383..2682468 (+) 1086 WP_127164292.1 ABC transporter ATP-binding protein -
  DM558_RS12425 (DM558_12535) - 2682484..2683530 (+) 1047 WP_228411747.1 ABC transporter substrate-binding protein -
  DM558_RS12430 (DM558_12540) - 2683546..2684577 (+) 1032 WP_228411748.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48904.19 Da        Isoelectric Point: 7.0046

>NTDB_id=296210 DM558_RS12410 WP_127164290.1 2679257..2680618(-) (radA) [Entomomonas moraniae strain QZS01]
MAKAKRLYGCTECGATFPKWSGQCPECGAWNTMVETVIDNSPMSSSSKSWTGQSAQIKTLAEVSTEETPRFTTHSSELDR
VLGGGLVDGSIVLIGGDPGIGKSTILLQTLCNIANYHSALYVTGEESQQQVAMRARRLSLPEDKLKVMTETCIESIIHTA
KQEKPKVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLTRYAKQNDTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAVNELGVFAMTDKGLKEISNPSAIFLSRTQEAVPGSVVMATWEGSRPMLVEVQALVDTSHLGNP
RRVTLGLDQNRLAMLLAVLHRHGGVPTYDQDVFINVVGGVKVLETAADLALLATVISSLRNRPLSHDLLVFGEVGLSGEI
RPVPSGQERLKEAAKHGFKRAIIPKANAPKTAPEGLTVVAVTRLDQALEALFE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=296210 DM558_RS12410 WP_127164290.1 2679257..2680618(-) (radA) [Entomomonas moraniae strain QZS01]
ATGGCTAAAGCTAAACGTTTATATGGGTGTACTGAATGTGGAGCTACTTTTCCTAAATGGTCAGGTCAATGCCCTGAGTG
TGGTGCTTGGAATACAATGGTTGAAACAGTCATTGATAATTCCCCTATGTCTAGTAGCAGTAAAAGCTGGACAGGGCAAA
GTGCACAAATAAAAACGTTAGCTGAAGTCAGCACTGAAGAAACACCTCGCTTTACAACCCATTCATCTGAATTAGATCGT
GTATTAGGCGGTGGTTTAGTGGATGGTTCTATTGTACTTATCGGTGGTGATCCCGGTATTGGTAAATCAACTATCTTATT
ACAAACCTTATGTAATATTGCCAATTATCATTCCGCCCTTTATGTGACAGGTGAGGAGTCACAGCAGCAAGTAGCGATGC
GTGCTCGCCGTCTTAGCTTACCCGAAGATAAGCTAAAAGTAATGACTGAAACGTGTATTGAGTCAATTATTCACACCGCC
AAACAGGAAAAACCTAAAGTAATGGTGATTGACTCGATTCAAACTATTTTTACCGAACAATTACAATCTGCACCCGGTGG
GGTTGCTCAAGTAAGGGAAAGTGCTGCCTTACTAACACGCTATGCTAAACAAAACGACACCGCTATTTTCTTAGTTGGTC
ACGTCACCAAAGAAGGGGCTTTAGCTGGCCCTCGTGTTCTAGAACACATGGTCGATACAGTGCTTTATTTCGAAGGTGAA
TCCGATGGTCGCTTACGCCTTTTAAGGGCTGTTAAAAACCGTTTTGGTGCAGTCAATGAACTCGGTGTATTTGCAATGAC
AGATAAAGGATTAAAAGAAATCTCTAATCCATCAGCCATTTTTTTAAGCCGTACTCAAGAAGCCGTACCCGGTAGTGTTG
TTATGGCTACATGGGAGGGATCACGCCCCATGTTGGTTGAAGTTCAAGCACTGGTTGATACGAGCCACTTAGGAAATCCA
CGCCGTGTTACACTTGGCTTAGATCAAAATAGATTAGCTATGCTATTAGCTGTGTTACATCGTCACGGTGGTGTTCCTAC
TTACGATCAAGATGTTTTTATTAATGTGGTGGGTGGCGTTAAAGTGCTTGAAACGGCGGCTGATTTAGCGCTATTAGCGA
CGGTTATTTCTAGTTTACGTAATCGACCTTTATCACACGACCTATTAGTTTTTGGTGAGGTGGGATTATCAGGTGAAATC
CGACCTGTTCCTAGTGGTCAAGAACGTTTAAAGGAAGCGGCAAAACATGGTTTTAAACGAGCTATTATCCCCAAAGCCAA
CGCACCTAAAACAGCTCCTGAAGGTTTAACTGTGGTTGCTGTTACAAGGCTCGACCAAGCTTTAGAGGCATTGTTTGAAT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A451EP30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.115

99.779

0.49
  radA Streptococcus pneumoniae Rx1

45.695

100

0.457
  radA Streptococcus pneumoniae D39

45.695

100

0.457
  radA Streptococcus pneumoniae R6

45.695

100

0.457
  radA Streptococcus pneumoniae TIGR4

45.695

100

0.457
  radA Streptococcus mitis NCTC 12261

45.695

100

0.457
  radA Streptococcus mitis SK321

45.695

100

0.457

Multiple sequence alignment