Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   DM447_RS13865 Genome accession   NZ_CP029797
Coordinates   2727244..2728194 (-) Length   316 a.a.
NCBI ID   WP_112181783.1    Uniprot ID   -
Organism   Paraliobacillus zengyii strain X-1125     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2722244..2733194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DM447_RS13835 - 2722656..2723012 (-) 357 WP_112181777.1 response regulator -
  DM447_RS13840 - 2723036..2723503 (-) 468 WP_112181778.1 chemotaxis protein CheW -
  DM447_RS13845 - 2723705..2724241 (-) 537 WP_338418762.1 chemotaxis protein CheX -
  DM447_RS13850 - 2724381..2725358 (-) 978 WP_112181780.1 siderophore ABC transporter substrate-binding protein -
  DM447_RS13855 - 2725552..2726310 (-) 759 WP_112181781.1 ABC transporter ATP-binding protein -
  DM447_RS13860 - 2726304..2727251 (-) 948 WP_112181782.1 iron chelate uptake ABC transporter family permease subunit -
  DM447_RS13865 ceuB 2727244..2728194 (-) 951 WP_112181783.1 ABC transporter permease Machinery gene
  DM447_RS13870 - 2728396..2728824 (+) 429 WP_112181784.1 BrxA/BrxB family bacilliredoxin -
  DM447_RS13875 - 2728873..2729175 (-) 303 WP_112181785.1 hypothetical protein -
  DM447_RS13880 - 2729317..2730573 (-) 1257 WP_112181786.1 C40 family peptidase -
  DM447_RS13885 aroD 2730822..2731574 (-) 753 WP_112181787.1 type I 3-dehydroquinate dehydratase -
  DM447_RS13890 - 2731654..2732535 (-) 882 WP_112181788.1 DMT family transporter -
  DM447_RS13895 - 2732635..2733051 (-) 417 WP_112181789.1 universal stress protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34885.20 Da        Isoelectric Point: 10.0697

>NTDB_id=296074 DM447_RS13865 WP_112181783.1 2727244..2728194(-) (ceuB) [Paraliobacillus zengyii strain X-1125]
MKKRYLIILLILLSILSLFIGVVNLTPGDLFHLTESQSQIIWISRFPRLISIIIAGVSMSICGLIMQQLSRNKFVSPTTA
GTMDSARFGILVSMLLFSTASPIQKMLVAFVFALAGTFIFMKILDKVKFKDPIFIPLVGLMFGSVISSITTFFAYKNDLI
QNMSSWLQGNFALIIQGSYEMLYISIPLVVLAYIYANRFTIAGMGEDFSTNLGMNHKKIVNIGLVIVALMTSVVIITVGM
IPFLGLIVPNIVTLYKGDNLKNSLPHTALLGAIFVLVCDIIGRTIIFPYEIAIGVTVGVIGSGLFLYLVMRRKVYE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=296074 DM447_RS13865 WP_112181783.1 2727244..2728194(-) (ceuB) [Paraliobacillus zengyii strain X-1125]
ATGAAAAAAAGATACTTGATTATTCTACTAATTCTATTATCTATTCTATCCTTATTTATTGGAGTAGTTAATTTAACGCC
AGGAGATTTGTTTCACTTAACAGAAAGTCAGTCACAAATAATATGGATTAGCCGATTTCCACGATTAATCAGTATTATAA
TTGCAGGAGTTAGCATGAGTATTTGTGGATTAATCATGCAACAATTGAGTCGAAATAAATTTGTTTCACCAACAACTGCT
GGAACAATGGACTCTGCAAGATTTGGTATTTTAGTATCTATGTTGTTATTTTCAACTGCATCACCTATTCAAAAAATGTT
AGTTGCATTTGTTTTTGCATTAGCTGGAACATTTATCTTTATGAAAATTTTAGATAAGGTGAAATTCAAAGACCCGATAT
TTATTCCTTTAGTGGGATTGATGTTTGGTAGTGTCATAAGTTCAATAACGACGTTTTTTGCTTATAAAAATGATTTAATT
CAAAATATGTCTTCTTGGTTACAAGGTAATTTTGCGCTGATCATTCAAGGGAGTTATGAAATGCTCTACATAAGTATACC
ATTGGTTGTTCTCGCATATATCTATGCAAATCGTTTTACAATAGCAGGAATGGGCGAAGACTTTTCTACGAATCTCGGAA
TGAATCATAAGAAAATTGTGAATATAGGGCTTGTAATTGTAGCGTTAATGACCTCTGTTGTTATCATAACGGTTGGAATG
ATTCCATTCTTAGGTTTGATCGTACCGAATATTGTAACGCTATATAAAGGTGATAATCTGAAGAATAGCTTGCCACATAC
TGCATTATTAGGTGCCATATTTGTATTGGTTTGTGACATTATTGGAAGAACTATTATCTTCCCTTATGAAATTGCAATTG
GTGTCACCGTAGGCGTTATTGGTAGTGGACTATTTCTTTATTTGGTAATGAGGAGAAAGGTTTATGAGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.591

99.051

0.551

Multiple sequence alignment