Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DM447_RS00700 Genome accession   NZ_CP029797
Coordinates   144331..145698 (+) Length   455 a.a.
NCBI ID   WP_112179222.1    Uniprot ID   -
Organism   Paraliobacillus zengyii strain X-1125     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 139331..150698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DM447_RS00680 - 139535..139999 (+) 465 WP_112179215.1 CtsR family transcriptional regulator -
  DM447_RS00685 - 140090..140644 (+) 555 WP_112179217.1 UvrB/UvrC motif-containing protein -
  DM447_RS00690 - 140644..141708 (+) 1065 WP_112179219.1 protein arginine kinase -
  DM447_RS00695 clpC 141729..144158 (+) 2430 WP_112179220.1 ATP-dependent protease ATP-binding subunit ClpC -
  DM447_RS00700 radA 144331..145698 (+) 1368 WP_112179222.1 DNA repair protein RadA Machinery gene
  DM447_RS00705 - 145880..146989 (+) 1110 WP_112182607.1 PIN/TRAM domain-containing protein -
  DM447_RS00710 - 147159..148823 (-) 1665 WP_112179223.1 glycerol-3-phosphate dehydrogenase/oxidase -
  DM447_RS00715 glpK 149043..150548 (-) 1506 WP_112179225.1 glycerol kinase GlpK -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49976.57 Da        Isoelectric Point: 6.6176

>NTDB_id=296056 DM447_RS00700 WP_112179222.1 144331..145698(+) (radA) [Paraliobacillus zengyii strain X-1125]
MAKVKTKFVCEECGYEAPKWMGKCPSCNNWNTLNEEVTTNAVSKHTGIGQVSNIKPESITAIQSNEETRITTDMPELNRV
LGGGIVAGSLVLIGGDPGIGKSTLLLQVSEQLARKQLRVLYISGEESTRQTKLRADRLNVKSEQLFVLAETNLQLINNQI
EQLDPAFIVIDSIQTIFKEEVTSAPGSVTQVRECTSELMRIAKTKHIPIFIVGHVTKEGAIAGPRMLEHMVDAVLYFEGE
RHHTFRILRGVKNRFGSTNEIGIFEMKEEGLREVLNPSEIFLEERSQGVAGSTVVASMEGTRPILVEIQSLISPTSFGQA
RRMATGIDHNRVPLLMAVLEKRVGLLMQNQDAYVKVAGGVKLDEPAIDLAIAVSIASSFKDKTSKPDDVLIGEVGLTGEI
RRVSRIDQRVQEAAKLGFKRAIIPARNLEGWTVPTSIEVIGVNSVQEALKITLNE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=296056 DM447_RS00700 WP_112179222.1 144331..145698(+) (radA) [Paraliobacillus zengyii strain X-1125]
ATGGCCAAAGTTAAAACTAAATTTGTATGTGAAGAGTGTGGATATGAAGCGCCAAAGTGGATGGGTAAGTGCCCAAGTTG
TAATAACTGGAACACATTAAATGAAGAAGTAACGACGAATGCAGTTTCTAAACATACCGGGATTGGGCAAGTATCTAATA
TCAAACCAGAAAGTATCACGGCTATTCAATCAAATGAAGAAACGAGAATAACCACGGATATGCCGGAATTAAATCGGGTG
TTAGGTGGCGGTATTGTGGCAGGTTCACTTGTTTTAATTGGTGGAGATCCGGGAATTGGTAAATCTACATTACTATTACA
AGTATCAGAGCAATTAGCAAGAAAACAATTACGCGTTTTGTATATTTCTGGAGAAGAATCAACAAGGCAAACAAAATTAC
GTGCAGATCGATTAAATGTTAAATCGGAACAGTTATTCGTTTTAGCTGAAACAAACTTACAACTTATTAATAATCAGATT
GAACAATTAGACCCTGCTTTTATTGTTATTGATTCTATTCAAACAATTTTTAAAGAAGAAGTAACTAGTGCACCAGGAAG
TGTTACGCAGGTAAGAGAATGCACAAGTGAATTAATGCGCATTGCCAAGACGAAACATATACCTATATTTATAGTTGGTC
ATGTAACAAAAGAGGGAGCAATAGCGGGACCAAGAATGTTAGAACATATGGTTGATGCGGTTTTATACTTTGAAGGTGAA
AGACATCATACGTTTCGGATTCTGCGTGGTGTAAAGAATCGATTTGGTAGTACAAATGAAATTGGTATTTTTGAAATGAA
GGAAGAGGGTTTGCGAGAAGTATTAAACCCATCTGAGATATTTTTAGAAGAACGTTCACAAGGTGTTGCAGGTTCTACTG
TTGTAGCATCAATGGAAGGAACAAGACCTATATTAGTAGAAATCCAATCATTAATATCACCAACAAGTTTTGGGCAAGCG
AGGAGAATGGCGACGGGTATTGATCATAATCGGGTCCCACTGCTAATGGCGGTATTAGAAAAAAGAGTAGGCTTATTAAT
GCAAAATCAAGATGCATATGTCAAGGTAGCTGGTGGTGTTAAGTTGGATGAACCAGCAATTGATTTAGCGATAGCTGTTA
GTATTGCATCAAGTTTTAAGGATAAGACATCCAAGCCAGATGATGTCTTAATTGGCGAGGTAGGTTTAACAGGAGAGATT
AGACGTGTTTCAAGAATTGATCAGCGTGTTCAAGAAGCTGCGAAATTAGGTTTTAAGCGAGCGATTATACCTGCAAGGAA
TTTAGAAGGTTGGACAGTTCCAACATCGATAGAAGTTATCGGCGTAAACTCAGTTCAAGAGGCATTAAAAATCACTTTAA
ATGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(351-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

71.711

100

0.719
  radA Streptococcus pneumoniae Rx1

61.674

99.78

0.615
  radA Streptococcus pneumoniae D39

61.674

99.78

0.615
  radA Streptococcus pneumoniae R6

61.674

99.78

0.615
  radA Streptococcus pneumoniae TIGR4

61.674

99.78

0.615
  radA Streptococcus mitis NCTC 12261

61.674

99.78

0.615
  radA Streptococcus mitis SK321

61.674

99.78

0.615

Multiple sequence alignment