Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   LF82_RS19075 Genome accession   NC_011993
Coordinates   3854194..3854862 (-) Length   222 a.a.
NCBI ID   WP_001296533.1    Uniprot ID   B7N279
Organism   Escherichia coli LF82     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3849194..3859862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LF82_RS19045 (LF82_1854) rfaQ 3849372..3850430 (-) 1059 WP_000360397.1 lipopolysaccharide core heptosyltransferase RfaQ -
  LF82_RS19050 (LF82_2419) waaA 3850843..3852120 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  LF82_RS19055 (LF82_0331) coaD 3852128..3852607 (+) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  LF82_RS19060 (LF82_1427) mutM 3852646..3853455 (-) 810 WP_001114505.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  LF82_RS19065 (LF82_1954) rpmG 3853553..3853720 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  LF82_RS19070 (LF82_1949) rpmB 3853741..3853977 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  LF82_RS19075 (LF82_3362) radC 3854194..3854862 (-) 669 WP_001296533.1 DNA repair protein RadC Machinery gene
  LF82_RS19080 (LF82_0470) coaBC 3855034..3856254 (+) 1221 WP_000050149.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  LF82_RS19085 (LF82_0534) dut 3856232..3856690 (+) 459 WP_000976070.1 dUTP diphosphatase -
  LF82_RS19090 (LF82_2135) slmA 3856797..3857393 (+) 597 WP_000818603.1 nucleoid occlusion factor SlmA -
  LF82_RS19095 (LF82_1794) pyrE 3857430..3858071 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  LF82_RS19100 (LF82_1921) rph 3858137..3858853 (-) 717 WP_001247093.1 ribonuclease PH -
  LF82_RS19105 (LF82_3353) yicC 3858980..3859843 (+) 864 WP_000621332.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25286.40 Da        Isoelectric Point: 7.9748

>NTDB_id=29602 LF82_RS19075 WP_001296533.1 3854194..3854862(-) (radC) [Escherichia coli LF82]
MKNNVQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=29602 LF82_RS19075 WP_001296533.1 3854194..3854862(-) (radC) [Escherichia coli LF82]
GTGAAAAACAATGTACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAGCAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTACGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACAGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCGCATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(10-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7N279

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment