Detailed information NTG0295999

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: DM292_RS20540
• Genome accession: NZ_CP029772
• Coordinates: 4383271..4384557 (+)
• Length: 428 a.a.
• NCBI ID: WP_110778807.1
• Uniprot ID: -
• Organism: Stutzerimonas frequens strain R2A2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4378271..4389557

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DM292_RS20520 (DM292_20520)	-	4379147..4379551 (+)	405	WP_013984344.1	hypothetical protein	-
DM292_RS20525 (DM292_20525)	rsmD	4379563..4380165 (-)	603	WP_045632982.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
DM292_RS20530 (DM292_20530)	-	4380165..4381697 (-)	1533	WP_110778805.1	pitrilysin family protein	-
DM292_RS20535 (DM292_20535)	-	4381690..4383042 (-)	1353	WP_110778806.1	pitrilysin family protein	-
DM292_RS20540 (DM292_20540)	pilA	4383271..4384557 (+)	1287	WP_110778807.1	signal recognition particle-docking protein FtsY	Machinery gene
DM292_RS20545 (DM292_20545)	ftsE	4384554..4385225 (+)	672	WP_045665759.1	cell division ATP-binding protein FtsE	-
DM292_RS20550 (DM292_20550)	ftsX	4385222..4386241 (+)	1020	WP_110778808.1	permease-like cell division protein FtsX	-
DM292_RS20555 (DM292_20555)	rpoH	4386353..4387207 (+)	855	WP_003297176.1	RNA polymerase sigma factor RpoH	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 45652.99 Da
• Isoelectric Point: 4.5924

>NTDB_id=295999 DM292_RS20540 WP_110778807.1 4383271..4384557(+) (pilA) [Stutzerimonas frequens strain R2A2]
MFGSNDDKKTPAEPGEKKGLFGWLRKKPQPAPAEQPAAEQPDSESVEQTGAPVESPVATPQEEQPARAVEADMQPAEVIE
PVLLHPEPEPEPEPEPEPEPEPEPVPAPVVATAPEAPTKLGFFARLRQGLSKTSASIGEGMASLFLGKKAIDDDLLDELE
TRLLTADVGVEATTAIMQNLTRRVSRKELADSGALYTALQEELVGLLKPVEQPLAIDAGKRPYVILVVGVNGVGKTTTIG
KLAKKLQLDGKKVMLAAGDTFRAAAVEQLQVWGERNGIPVVAQHTGADSASVIFDAVQAAKARGIDVLIADTAGRLHTKD
NLMEELKKVRRVMGKLDESAPHEVLLVLDAGTGQNAINQTKQFNQAVELTGLALTKLDGTAKGGVIFALAKQFGTPIRYI
GVGEGIDDLRTFEADAFVKALFSQREDA

Nucleotide

• Length: 1287 bp

>NTDB_id=295999 DM292_RS20540 WP_110778807.1 4383271..4384557(+) (pilA) [Stutzerimonas frequens strain R2A2]
ATGTTTGGTTCCAACGACGACAAGAAGACGCCGGCCGAGCCCGGTGAAAAGAAAGGCCTGTTCGGCTGGCTGCGCAAGAA
ACCGCAGCCCGCGCCGGCAGAGCAGCCCGCCGCCGAACAGCCGGACAGCGAATCGGTCGAGCAGACCGGGGCGCCTGTCG
AATCGCCTGTCGCGACACCTCAGGAAGAGCAACCGGCGCGTGCGGTCGAGGCCGATATGCAGCCGGCTGAGGTCATAGAG
CCGGTGCTGCTGCACCCTGAACCCGAACCCGAACCCGAACCCGAACCGGAGCCGGAGCCGGAGCCGGAGCCGGTACCTGC
CCCGGTCGTAGCGACCGCGCCGGAGGCCCCAACCAAGCTCGGCTTCTTCGCTCGCCTGCGCCAGGGGCTGTCGAAAACCA
GCGCCAGCATTGGCGAAGGTATGGCCAGCCTGTTCCTCGGCAAGAAGGCCATCGACGACGATCTGCTCGACGAGCTGGAA
ACCCGCCTGCTCACCGCCGACGTCGGCGTCGAGGCGACCACCGCGATCATGCAGAATCTCACCCGGCGCGTCTCGCGCAA
GGAGTTGGCCGACAGCGGCGCGCTCTACACCGCGCTGCAGGAAGAGCTTGTTGGCCTGCTCAAGCCGGTCGAGCAGCCGC
TGGCGATCGATGCTGGCAAGCGCCCGTATGTGATCCTGGTGGTCGGCGTGAACGGCGTCGGCAAGACCACCACCATCGGC
AAGCTGGCCAAGAAGCTGCAGCTCGACGGCAAGAAGGTCATGCTCGCCGCCGGCGACACATTCCGCGCCGCGGCGGTGGA
GCAGCTGCAGGTCTGGGGCGAGCGCAACGGCATTCCGGTGGTCGCCCAGCACACCGGTGCCGATTCCGCCTCGGTGATCT
TCGATGCGGTGCAGGCCGCCAAGGCGCGCGGCATCGACGTGCTGATCGCCGACACCGCGGGCCGTCTGCATACCAAGGAC
AACCTGATGGAAGAGCTGAAGAAAGTCCGTCGGGTGATGGGCAAGCTCGACGAGTCGGCTCCCCACGAAGTCCTGCTGGT
ACTCGACGCCGGCACTGGCCAGAACGCCATCAACCAGACCAAGCAGTTCAACCAGGCGGTCGAGCTGACCGGGCTGGCAC
TGACCAAGCTCGACGGCACCGCCAAGGGCGGCGTGATCTTCGCGCTGGCCAAGCAGTTCGGCACGCCGATCCGCTACATC
GGCGTGGGTGAAGGCATCGACGATCTGCGCACCTTCGAGGCTGATGCCTTCGTCAAGGCGCTGTTCTCCCAGCGGGAAGA
CGCATGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (223-422)

• SRP54-type protein, helical bundle domain (SRP54_N) (138-203)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	49.292	99.065	0.488