Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AWB57_RS05960 Genome accession   NZ_CP029760
Coordinates   1197791..1199140 (+) Length   449 a.a.
NCBI ID   WP_064970609.1    Uniprot ID   A0AAP3EVF4
Organism   Riemerella anatipestifer strain RCAD0133     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1192791..1204140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWB57_RS05940 (AWB57_05925) - 1193492..1194886 (+) 1395 WP_064970357.1 DUF5689 domain-containing protein -
  AWB57_RS05945 (AWB57_05930) - 1194926..1195804 (-) 879 WP_010891297.1 IS982-like element ISRa1 family transposase -
  AWB57_RS05950 (AWB57_05935) - 1195964..1196899 (+) 936 WP_064970613.1 nitronate monooxygenase family protein -
  AWB57_RS05955 (AWB57_05940) - 1196934..1197698 (-) 765 WP_064970611.1 enoyl-CoA hydratase/isomerase family protein -
  AWB57_RS05960 (AWB57_05945) radA 1197791..1199140 (+) 1350 WP_064970609.1 DNA repair protein RadA Machinery gene
  AWB57_RS05965 (AWB57_05950) - 1199187..1200830 (+) 1644 WP_064970607.1 Ig-like domain-containing protein -
  AWB57_RS05970 (AWB57_05955) - 1200842..1201306 (+) 465 WP_064970605.1 heme-binding domain-containing protein -
  AWB57_RS05975 (AWB57_05960) - 1201348..1202193 (-) 846 WP_064970602.1 GLPGLI family protein -
  AWB57_RS05980 (AWB57_05965) - 1202408..1203838 (+) 1431 WP_064970600.1 redoxin domain-containing protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49714.21 Da        Isoelectric Point: 7.4843

>NTDB_id=295953 AWB57_RS05960 WP_064970609.1 1197791..1199140(+) (radA) [Riemerella anatipestifer strain RCAD0133]
MAKLKTVYYCQNCGSQHSKWHGQCQNCGQWNTLVEEIAEKTTSKNYAGDFGRQHLINIIEVETQAEQRIKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKILYVSGEESASQIKMRADRLTEFQNPNCFLYTETSIEKILHEAKKL
QPDFMIVDSIQTLHSQVMESSPGTVSQIRECASEVIKFAKATNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTAEIGIYEMISAGLKEIKNPSEVLITKKSEEFSGNAVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDAKRLNMLLAVLEKRSGFQLGAKDVFLNITGGIKTDDPALDLAVVAAILSSNEDIAVSEHYCFAGEIGLSGEIRPV
PQIEKRISEAEKLGYHKIFVSKQNKIPKKKHNIKIVEVSKIEDFHEEIF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=295953 AWB57_RS05960 WP_064970609.1 1197791..1199140(+) (radA) [Riemerella anatipestifer strain RCAD0133]
GTGGCTAAATTAAAAACAGTATATTATTGTCAGAATTGTGGTTCACAACATTCCAAATGGCACGGGCAATGCCAAAATTG
TGGACAATGGAATACCTTAGTGGAAGAGATTGCAGAAAAAACAACCTCTAAAAATTATGCAGGAGATTTTGGAAGGCAAC
ACCTCATCAATATCATAGAAGTAGAAACACAAGCTGAACAACGCATTAAAACTCCAAGCGAAGAACTTAACAGAGTTTTG
GGTGGCGGTATTGTTTTAGGTTCGGTAACTCTTATCGGAGGCGAACCAGGTATAGGGAAATCTACATTACTGTTGCAATT
AGCCCTTAAAATGAAGAAAAAAATCCTCTATGTTTCTGGGGAAGAAAGTGCCTCTCAAATCAAAATGAGAGCAGATAGAT
TAACGGAATTCCAAAATCCGAATTGTTTTTTATACACTGAAACTTCAATAGAGAAAATCTTACACGAAGCCAAAAAACTT
CAGCCCGATTTTATGATTGTGGACTCTATACAAACCTTACATTCGCAGGTGATGGAGAGTTCCCCAGGTACAGTGTCTCA
GATTAGAGAATGTGCTTCGGAAGTTATAAAATTTGCAAAAGCGACTAACACGCCTGTTTTTTTAGTGGGACATATTACTA
AAGATGGACAAATAGCGGGACCAAAAGTGTTGGAGCATATGGTAGATGTAGTTCTTAATTTTGATGGTGATAGAAACCAC
TTATTTAGACTTTTAAGAGCAAATAAAAATCGTTTTGGTTCTACTGCGGAGATTGGTATTTATGAGATGATTTCAGCAGG
ATTGAAAGAAATTAAAAATCCTTCGGAAGTGCTTATTACCAAAAAATCCGAAGAGTTTTCAGGTAATGCGGTGGCAGTAA
CGCTAGAAGGTAACCGCCCTATGTTGCTAGAAATACAAGCCCTCGTAAGTACAGCGGTGTATGGTACACCACAGAGAAGT
TCTACGGGTTTTGATGCTAAAAGGCTCAATATGCTTTTGGCGGTTTTGGAGAAACGTTCTGGCTTTCAACTTGGGGCTAA
AGATGTATTTTTAAATATTACTGGAGGTATTAAAACGGACGACCCCGCTCTAGATTTGGCTGTAGTTGCCGCTATCTTAT
CTTCCAACGAGGATATTGCAGTATCGGAGCATTATTGTTTTGCTGGGGAAATTGGTCTTAGTGGAGAAATTCGTCCTGTG
CCACAAATAGAAAAACGCATCTCCGAAGCCGAAAAATTAGGCTATCATAAGATATTTGTTTCTAAACAAAATAAAATACC
AAAGAAAAAACACAATATAAAAATTGTGGAAGTTTCTAAAATAGAAGACTTTCACGAAGAAATATTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(336-424)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

47.473

100

0.481
  radA Streptococcus pneumoniae Rx1

47.368

100

0.481
  radA Streptococcus pneumoniae D39

47.368

100

0.481
  radA Streptococcus pneumoniae TIGR4

47.368

100

0.481
  radA Streptococcus pneumoniae R6

47.368

100

0.481
  radA Streptococcus mitis SK321

47.241

100

0.477
  radA Bacillus subtilis subsp. subtilis str. 168

48.611

96.214

0.468

Multiple sequence alignment