Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   LF82_RS15445 Genome accession   NC_011993
Coordinates   3118156..3119415 (+) Length   419 a.a.
NCBI ID   WP_001161827.1    Uniprot ID   A0A0H3ELU3
Organism   Escherichia coli LF82     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3113156..3124415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LF82_RS15430 (LF82_463) - 3113671..3115347 (+) 1677 WP_001331697.1 polysaccharide biosynthesis/export family protein -
  LF82_RS15435 (LF82_464) kdsB 3115357..3116097 (+) 741 WP_000030761.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LF82_RS15440 (LF82_465) - 3116094..3118121 (+) 2028 WP_000579521.1 capsular polysaccharide biosynthesis protein -
  LF82_RS15445 (LF82_466) kpsS 3118156..3119415 (+) 1260 WP_001161827.1 capsule biosynthesis protein Regulator
  LF82_RS15450 (LF82_467) - 3119542..3120750 (-) 1209 WP_000343613.1 IS256-like element ISEc39 family transposase -
  LF82_RS15455 (LF82_468) - 3120899..3121828 (-) 930 WP_102781784.1 hypothetical protein -
  LF82_RS15460 (LF82_469) - 3122271..3123428 (-) 1158 WP_000199920.1 M48 family metallopeptidase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 49880.43 Da        Isoelectric Point: 10.0395

>NTDB_id=29586 LF82_RS15445 WP_001161827.1 3118156..3119415(+) (kpsS) [Escherichia coli LF82]
MQGNALTILLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRNRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWATSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKDSYLVIKHHPMDRGHRLYRPLIKRLSKEYGLDERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGEMIFNKIKLD
KDFRNFSHQVGNTKANNTE

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=29586 LF82_RS15445 WP_001161827.1 3118156..3119415(+) (kpsS) [Escherichia coli LF82]
ATGCAAGGCAACGCACTAACTATTTTATTATCGGGTAAAAAATATCTGCTATTGCAGGGACCGATGGGACCTTTTTTCAA
CGACGTTGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGTATTCAACGGTGGTGATCGTTTTTACTGCC
GCAATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGTTGGTTGCGAGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCATAAAGAAGCAAAACGCTGGGCAACGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGCATTGGCCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCATTTTCCCCCTGGTATGAAGCTCGTTGCTGGGTTCGTGCGTACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AAGTATTGCCGCGGTTAATGAATGAGCTGGATCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGAGATTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCAAAAGA
CAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGATTGAGTAAGG
AATATGGCTTAGATGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTAGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTGGTTAAGACGCAGGTTAATGGGGTTTATTATGGGGAGATGATTTTTAACAAGATAAAACTGGAT
AAAGATTTTCGGAATTTTTCGCATCAAGTAGGAAATACAAAAGCAAATAATACAGAATAG

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3ELU3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.394

94.511

0.372

Multiple sequence alignment