Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DLM82_RS02335 Genome accession   NZ_CP029749
Coordinates   391741..392466 (+) Length   241 a.a.
NCBI ID   WP_000912307.1    Uniprot ID   A0AAV3JGZ9
Organism   Streptococcus agalactiae strain PLGBS13     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 386741..397466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLM82_RS02300 (DLM82_02300) tsaE 387544..387987 (+) 444 WP_000500161.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DLM82_RS02305 (DLM82_02305) - 387980..388501 (+) 522 WP_000043146.1 GNAT family N-acetyltransferase -
  DLM82_RS02310 (DLM82_02310) - 388510..389817 (+) 1308 WP_000708156.1 LCP family protein -
  DLM82_RS02315 (DLM82_02315) - 389881..390177 (-) 297 WP_000690175.1 hypothetical protein -
  DLM82_RS02320 (DLM82_02320) - 390174..390593 (-) 420 WP_000368097.1 HIT family protein -
  DLM82_RS02325 (DLM82_02325) - 390929..391432 (+) 504 WP_000773453.1 hypothetical protein -
  DLM82_RS02330 (DLM82_02330) - 391484..391669 (-) 186 WP_000368100.1 hypothetical protein -
  DLM82_RS02335 (DLM82_02335) pptA 391741..392466 (+) 726 WP_000912307.1 ABC transporter ATP-binding protein Regulator
  DLM82_RS02340 (DLM82_02340) pptB 392468..393502 (+) 1035 WP_000732713.1 ABC transporter permease Regulator
  DLM82_RS02345 (DLM82_02345) ccrZ 393560..394360 (+) 801 WP_000155919.1 cell cycle regulator CcrZ -
  DLM82_RS02350 (DLM82_02350) trmB 394350..394985 (+) 636 WP_001266024.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DLM82_RS02360 (DLM82_02360) rimP 395475..395951 (+) 477 WP_041971671.1 ribosome maturation factor RimP -
  DLM82_RS02365 (DLM82_02365) nusA 395987..397138 (+) 1152 WP_000032295.1 transcription termination factor NusA -
  DLM82_RS02370 (DLM82_02370) rnpM 397160..397456 (+) 297 WP_001140526.1 RNase P modulator RnpM -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26835.26 Da        Isoelectric Point: 4.5704

>NTDB_id=295831 DLM82_RS02335 WP_000912307.1 391741..392466(+) (pptA) [Streptococcus agalactiae strain PLGBS13]
MLKIENVTGGYVNIPVLKNISFEVNDGELVGLIGLNGAGKSTTINEIIGILRPYQGDITIDGISLEADQELYRKKIGFIP
ETPSLYEELTLREHLETVAMAYDIATDEVMARAQKLLEMFRLTDKLDWFPMHFSKGMKQKVMIICAFVVSPSLFIVDEPF
LGLDPLAISDLINLLAEEKAKGKSILMSTHVLDSAEKMCDRFVILHKGEIRAVGTLEELRAIFGDSNANLNDIYIALTKE
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=295831 DLM82_RS02335 WP_000912307.1 391741..392466(+) (pptA) [Streptococcus agalactiae strain PLGBS13]
ATGTTAAAAATTGAAAATGTTACAGGGGGGTATGTTAATATCCCAGTTTTAAAAAATATTTCTTTTGAAGTAAATGATGG
AGAGTTAGTTGGATTAATTGGGCTTAATGGTGCAGGAAAATCAACCACTATTAACGAGATTATTGGTATTTTGAGACCCT
ATCAAGGAGATATTACAATTGATGGTATTAGTCTTGAAGCCGACCAAGAACTTTATAGAAAGAAAATAGGCTTTATTCCT
GAGACACCAAGTCTCTATGAGGAGCTAACTCTCAGGGAACATTTAGAAACGGTAGCTATGGCGTATGATATTGCCACCGA
TGAAGTTATGGCACGTGCGCAAAAACTATTAGAGATGTTTCGTCTAACAGATAAATTAGACTGGTTTCCAATGCATTTTT
CAAAGGGAATGAAACAAAAGGTTATGATTATTTGTGCTTTTGTTGTATCTCCAAGTTTATTTATTGTTGATGAACCATTT
TTAGGTTTGGATCCACTAGCTATTTCAGATTTGATTAATCTTCTAGCAGAAGAAAAAGCTAAAGGGAAATCTATTTTGAT
GTCAACACACGTATTAGATTCTGCCGAAAAAATGTGTGATCGTTTTGTTATTTTACATAAAGGAGAAATACGGGCAGTTG
GAACCCTAGAGGAATTACGGGCTATTTTTGGAGACAGTAATGCTAATTTAAATGACATCTACATAGCTCTGACAAAAGAG
GTGTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

77.824

99.17

0.772
  pptA Streptococcus salivarius strain HSISS4

77.406

99.17

0.768

Multiple sequence alignment