Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AN232_RS21640 Genome accession   NZ_CP029727
Coordinates   4282452..4283066 (-) Length   204 a.a.
NCBI ID   WP_038639434.1    Uniprot ID   -
Organism   Citrobacter sp. CRE-46 strain AR_0157     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4277452..4288066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AN232_RS21625 (AN232_21625) helD 4277676..4279730 (-) 2055 WP_110498489.1 DNA helicase IV -
  AN232_RS21630 (AN232_21630) - 4279856..4280302 (+) 447 WP_038639436.1 YccF domain-containing protein -
  AN232_RS21635 (AN232_21635) yccS 4280321..4282474 (+) 2154 WP_110498840.1 YccS family putative transporter -
  AN232_RS21640 (AN232_21640) sxy/tfoX 4282452..4283066 (-) 615 WP_038639434.1 TfoX/Sxy family DNA transformation protein Regulator
  AN232_RS21645 (AN232_21645) sulA 4283283..4283792 (+) 510 WP_038639432.1 SOS-induced cell division inhibitor SulA -
  AN232_RS21650 (AN232_21650) ompA 4284150..4285208 (+) 1059 WP_038639429.1 porin OmpA -
  AN232_RS21655 (AN232_21655) matP 4285307..4285759 (-) 453 WP_038639426.1 macrodomain Ter protein MatP -
  AN232_RS21660 (AN232_21660) - 4285945..4287705 (+) 1761 WP_038639423.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23240.74 Da        Isoelectric Point: 8.9204

>NTDB_id=295668 AN232_RS21640 WP_038639434.1 4282452..4283066(-) (sxy/tfoX) [Citrobacter sp. CRE-46 strain AR_0157]
MKELSYAKIYKSQEYLASLGTIHYRSLFGSYSLTVGDTVFAMVANGELYLRACEQSVQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRTLGAQMCWLKLRQNN
PALTVKILYALEGAVSGMHEAALPAVRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=295668 AN232_RS21640 WP_038639434.1 4282452..4283066(-) (sxy/tfoX) [Citrobacter sp. CRE-46 strain AR_0157]
ATGAAAGAACTTTCTTATGCAAAGATCTATAAATCACAAGAATATCTGGCGTCTCTGGGAACAATTCACTATCGCTCATT
ATTTGGCAGTTACAGTCTGACGGTTGGGGATACGGTCTTTGCTATGGTCGCCAACGGTGAGTTATATCTTCGGGCCTGCG
AACAGAGCGTACAGTACTGTGTAAAAAATTCGCCTGTCTGGCTGACATTTATAAAGCGCGGGCGTCCGGTGGTACTCAAC
TACTATCAGGTGAATGATGCGCTGTGGCAAAACCAGCAGCAGTTGGTGTCGTTATCGCGGTACTCATTGGATGCTGCTGT
TAAGGAAAAACAGAGTCGCTTTGCTCAACATCGTCTGCGGGAACTACCAAATATGACGTTTCATCTGGAGACCCTGCTAA
ATGAAGCAGGGATTAAAGATGAGGGAACATTGCGAACGTTGGGCGCCCAAATGTGCTGGCTGAAACTGCGGCAAAACAAT
CCAGCCCTGACGGTAAAAATACTTTATGCCCTTGAAGGTGCGGTCAGTGGCATGCATGAAGCTGCGCTCCCGGCGGTCCG
TCGCCAGGAGCTGGTGGAGTGGGTCAGTTCTCTTACGCCGGAGCCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686

Multiple sequence alignment