Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   EQH39_RS00185 Genome accession   NZ_CP035241
Coordinates   36104..36874 (+) Length   256 a.a.
NCBI ID   WP_000616157.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901948     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 31104..41874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH39_RS00170 (EQH39_00185) - 33159..33596 (+) 438 WP_000076479.1 CoA-binding protein -
  EQH39_RS00175 (EQH39_00190) - 33779..34789 (-) 1011 WP_000009157.1 YeiH family protein -
  EQH39_RS00180 (EQH39_00195) - 34938..36107 (+) 1170 WP_000366343.1 pyridoxal phosphate-dependent aminotransferase -
  EQH39_RS00185 (EQH39_00200) recO 36104..36874 (+) 771 WP_000616157.1 DNA repair protein RecO Machinery gene
  EQH39_RS00190 (EQH39_00205) plsX 36871..37863 (+) 993 WP_000717457.1 phosphate acyltransferase PlsX -
  EQH39_RS00195 (EQH39_00210) - 37869..38102 (+) 234 WP_000659556.1 acyl carrier protein -
  EQH39_RS00200 (EQH39_00215) - 38139..38439 (+) 301 Protein_33 transposase family protein -
  EQH39_RS00205 (EQH39_00220) blpU 38642..38872 (+) 231 Protein_34 bacteriocin-like peptide BlpU -
  EQH39_RS10220 - 38875..39000 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  EQH39_RS00210 (EQH39_00225) comA 39587..41740 (+) 2154 WP_000668280.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29735.24 Da        Isoelectric Point: 5.1580

>NTDB_id=295473 EQH39_RS00185 WP_000616157.1 36104..36874(+) (recO) [Streptococcus pneumoniae strain TVO_1901948]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKCMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=295473 EQH39_RS00185 WP_000616157.1 36104..36874(+) (recO) [Streptococcus pneumoniae strain TVO_1901948]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTTGTCAAAATTTT
TACAGAGCAGGTTGGCAAATGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGTCTCTGTCCAGAGCATTATCATGAGGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992

Multiple sequence alignment