Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   DMC40_RS01380 Genome accession   NZ_CP029694
Coordinates   252157..253083 (+) Length   308 a.a.
NCBI ID   WP_011054187.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain ABC020055975     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 247157..258083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMC40_RS01370 (DMC40_01370) amiA 248620..250590 (+) 1971 WP_002992224.1 peptide ABC transporter substrate-binding protein Regulator
  DMC40_RS01375 (DMC40_01375) amiC 250655..252157 (+) 1503 WP_011054186.1 ABC transporter permease Regulator
  DMC40_RS01380 (DMC40_01380) amiD 252157..253083 (+) 927 WP_011054187.1 oligopeptide ABC transporter permease OppC Regulator
  DMC40_RS01385 (DMC40_01385) amiE 253092..254162 (+) 1071 WP_002992231.1 ABC transporter ATP-binding protein Regulator
  DMC40_RS01390 (DMC40_01390) amiF 254155..255078 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  DMC40_RS09910 - 255226..255405 (-) 180 WP_014635282.1 hypothetical protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34890.86 Da        Isoelectric Point: 8.5670

>NTDB_id=295410 DMC40_RS01380 WP_011054187.1 252157..253083(+) (amiD) [Streptococcus pyogenes strain ABC020055975]
MESIDKSKFRFVERDSEASEVIDTPAYSYWKSVFRQFFSKKSTVFMLVILVTVLMMSFIYPMFANYDFNDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINITIGVVLGAIWGVSKVFDKVMIEIYNIISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAVKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=295410 DMC40_RS01380 WP_011054187.1 252157..253083(+) (amiD) [Streptococcus pyogenes strain ABC020055975]
ATGGAATCGATTGATAAATCTAAATTTCGATTTGTTGAGCGCGATAGTGAAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTACTGGAAATCAGTGTTTCGTCAGTTTTTTTCTAAAAAATCTACAGTCTTTATGCTCGTGATTTTAGTGACAGTCT
TGATGATGAGCTTTATTTATCCAATGTTTGCCAACTACGACTTTAATGACGTTAGTAATATCAATGACTTTTCAAAGCGT
TATATTTGGCCAAATGCAGAGTACTGGTTTGGAACCGACAAAAATGGGCAATCTCTGTTTGATGGTGTTTGGTATGGGGC
ACGTAATTCTATTTTAATCTCAGTTATAGCGACACTAATTAATATCACCATTGGGGTAGTGTTAGGAGCCATATGGGGAG
TTTCTAAAGTATTTGATAAAGTTATGATTGAAATTTATAACATTATCTCAAATATCCCTTCTATGCTTATTATCATTGTT
TTGACCTATTCATTAGGTGCAGGATTTTGGAATTTGATTCTAGCTTTCTGTATCACTGGATGGATTGGTGTCGCCTACTC
CATCCGTGTTCAAATCTTGCGTTACCGTGATTTAGAATACAACCTTGCTAGTCAAACTTTGGGAACACCCATGTACAAGA
TTGCTGTTAAGAACCTCCTGCCTCAATTGGTTTCAGTTATCATGACTATGTTGTCACAAATGCTACCAGTTTATGTATCT
TCTGAGGCCTTCTTATCCTTCTTTGGGATTGGTTTACCAACCACCACTCCAAGTTTAGGACGTTTGATTGCTAATTATTC
AAGCAACTTAACAACAAATGCCTACCTCTTTTGGATTCCCTTAGTAACATTGATTTTAGTATCGTTACCACTATACATTG
TCGGACAAAACTTGGCTGATGCCAGTGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.701

100

0.737
  amiD Streptococcus thermophilus LMG 18311

73.052

100

0.731
  amiD Streptococcus thermophilus LMD-9

73.052

100

0.731

Multiple sequence alignment