Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   DKY63_RS18110 Genome accession   NZ_CP029693
Coordinates   3888716..3889120 (-) Length   134 a.a.
NCBI ID   WP_008152601.1    Uniprot ID   -
Organism   Pseudomonas putida strain JBC17     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3883716..3894120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKY63_RS18095 (DKY63_18095) - 3885558..3887591 (-) 2034 WP_239499413.1 methyl-accepting chemotaxis protein -
  DKY63_RS18100 (DKY63_18100) - 3887750..3888283 (-) 534 WP_110965328.1 chemotaxis protein CheW -
  DKY63_RS18105 (DKY63_18105) pilH 3888294..3888659 (-) 366 WP_096514418.1 twitching motility response regulator PilH -
  DKY63_RS18110 (DKY63_18110) pilG 3888716..3889120 (-) 405 WP_008152601.1 twitching motility response regulator PilG Regulator
  DKY63_RS18115 (DKY63_18115) gshB 3889462..3890421 (+) 960 WP_110965329.1 glutathione synthase -
  DKY63_RS18120 (DKY63_18120) - 3890520..3891419 (+) 900 WP_110965330.1 energy transducer TonB -
  DKY63_RS18125 (DKY63_18125) - 3891599..3892171 (+) 573 WP_110965331.1 YqgE/AlgH family protein -
  DKY63_RS18130 (DKY63_18130) ruvX 3892171..3892608 (+) 438 WP_110965332.1 Holliday junction resolvase RuvX -
  DKY63_RS18135 (DKY63_18135) pyrR 3892702..3893205 (+) 504 WP_110965333.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14589.99 Da        Isoelectric Point: 7.2441

>NTDB_id=295380 DKY63_RS18110 WP_008152601.1 3888716..3889120(-) (pilG) [Pseudomonas putida strain JBC17]
MEQHSSALKVMVIDDSKTIRRTAETLLKNVGCEVITAIDGFDALAKIADNHPGIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLNAIQAHVPGFAAVLPQ

Nucleotide


Download         Length: 405 bp        

>NTDB_id=295380 DKY63_RS18110 WP_008152601.1 3888716..3889120(-) (pilG) [Pseudomonas putida strain JBC17]
ATGGAACAGCATTCCAGCGCCTTGAAGGTCATGGTGATCGACGATTCGAAGACGATCCGTCGCACCGCCGAAACGCTGCT
CAAGAACGTGGGGTGTGAGGTCATCACGGCCATCGACGGTTTCGATGCCCTGGCCAAGATTGCCGACAACCACCCCGGCA
TCATCTTCGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACCTGCGCCCTGATCAAGAACAACAGTGCATTCAAG
TCCACGCCGGTGATTATGCTGTCGTCCAAGGACGGGCTGTTCGACAAGGCCAAGGGGCGCATCGTCGGTTCCGATCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTGAACGCGATCCAGGCCCATGTTCCGGGCTTCGCCGCCGTTTTGCCGC
AGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76

93.284

0.709

Multiple sequence alignment