Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DKY63_RS15950 Genome accession   NZ_CP029693
Coordinates   3426282..3427649 (-) Length   455 a.a.
NCBI ID   WP_110964972.1    Uniprot ID   A0A2Z4RJZ7
Organism   Pseudomonas putida strain JBC17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3421282..3432649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKY63_RS15920 (DKY63_15920) - 3421542..3422111 (+) 570 WP_110964968.1 hypothetical protein -
  DKY63_RS15925 (DKY63_15925) yjiA 3422204..3423175 (-) 972 WP_110964969.1 GTPase -
  DKY63_RS15935 (DKY63_15935) - 3423346..3423543 (-) 198 WP_077046022.1 YbdD/YjiX family protein -
  DKY63_RS15940 (DKY63_15940) - 3423558..3425624 (-) 2067 WP_110964970.1 carbon starvation CstA family protein -
  DKY63_RS15945 (DKY63_15945) - 3425783..3426151 (+) 369 WP_110964971.1 PilZ domain-containing protein -
  DKY63_RS15950 (DKY63_15950) radA 3426282..3427649 (-) 1368 WP_110964972.1 DNA repair protein RadA Machinery gene
  DKY63_RS15955 (DKY63_15955) mscL 3428265..3428678 (+) 414 WP_110964973.1 large-conductance mechanosensitive channel protein MscL -
  DKY63_RS15960 (DKY63_15960) - 3428760..3429536 (-) 777 WP_110964974.1 ferredoxin--NADP reductase -
  DKY63_RS15965 (DKY63_15965) - 3429881..3430612 (+) 732 WP_110964975.1 LuxR family transcriptional regulator -
  DKY63_RS15970 (DKY63_15970) - 3430776..3431900 (+) 1125 WP_110964976.1 class I SAM-dependent methyltransferase -
  DKY63_RS15975 (DKY63_15975) - 3431973..3432140 (-) 168 WP_110964977.1 DUF2474 domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48775.22 Da        Isoelectric Point: 6.8987

>NTDB_id=295377 DKY63_RS15950 WP_110964972.1 3426282..3427649(-) (radA) [Pseudomonas putida strain JBC17]
MAKAKRMYGCTECGSTFPKWAGQCSECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSVEEIPRFSTVSSEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=295377 DKY63_RS15950 WP_110964972.1 3426282..3427649(-) (radA) [Pseudomonas putida strain JBC17]
ATGGCCAAGGCCAAACGTATGTACGGCTGCACGGAGTGCGGCTCAACCTTCCCGAAGTGGGCCGGCCAATGCAGCGAATG
CGGCGCCTGGAACACGCTGACCGAAACCATGGTGGAAAGCGGTGGGGCTGCGGCGCCCAGCGGGCGCACAGGTTGGGCTG
GCCAGCAGGCGCAGATCAAGACTCTGGCCGAAGTCAGTGTCGAAGAAATTCCGCGCTTCTCCACCGTATCCAGCGAACTG
GATCGGGTGCTGGGAGGCGGTCTGGTCGACGGTTCGGTCGTGCTGATTGGCGGCGACCCGGGTATCGGTAAATCGACCAT
CCTGCTGCAGACCTTGTGCAACCTGGCCAAAAGCATGCCGGCACTGTATGTCACCGGCGAAGAGTCCCAGCAGCAAGTGG
CCATGCGTGCACGACGGCTGGGCTTGCCGCAGGATCAATTGCGGGTCATGACTGAAACCTGCATCGAGTCCATCATCGCC
ACGGCCCGCCAGGAAAAGCCCAAGGTCATGGTGATCGATTCGATCCAGACGATTTTCACCGAACAATTGCAATCGGCGCC
GGGCGGTGTATCCCAGGTACGCGAGAGCGCGGCGTTGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATTTTCCTCG
TTGGTCACGTAACCAAGGAAGGCGCGCTGGCCGGTCCCCGTGTGCTGGAGCACATGGTTGATACGGTGCTGTACTTCGAA
GGTGAGTCGGATGGGCGCCTGCGCTTGTTGCGGGCGGTGAAAAACCGTTTCGGTGCGGTTAACGAACTGGGCGTGTTCGG
CATGACGGACAAGGGCCTGAAGGAAGTCTCAAATCCGTCTGCGATTTTTCTGACACGTGCCCAGGAAGAAGTACCGGGCA
GTGTGGTCATGGCAACGTGGGAGGGCACGCGGCCGATGCTGGTGGAAGTCCAGGCACTGGTCGATGACAGCCACCTGGCC
AACCCGCGTCGGGTCACGCTGGGCCTGGATCAGAACCGCCTGGCGATGTTGCTGGCGGTGCTGCACCGTCATGGCGGAAT
TCCGACCCATGACCAGGATGTGTTTCTCAACGTGGTGGGTGGCGTGAAAGTGTTGGAAACGGCTTCCGACCTGGCGTTGA
TGGCGGCAGTGATGTCCAGTCTGCGCAACCGGCCGCTGCCCCATGACCTGCTGGTGTTTGGTGAAGTCGGTTTGTCCGGC
GAGGTGCGCCCTGTGCCAAGTGGTCAGGAGCGGCTGAAAGAGGCGGCCAAGCACGGATTCAAGCGTGCCATCGTACCCAA
GGGCAACGCACCGAAAGAGGCGCCGCCGGGGTTGCAGATCATTGCCGTTACACGCCTTGAACAGGCCCTCGACGCACTAT
TTGAGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4RJZ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus pneumoniae Rx1

46.522

100

0.47
  radA Streptococcus pneumoniae R6

46.522

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.522

100

0.47
  radA Streptococcus pneumoniae D39

46.522

100

0.47
  radA Streptococcus mitis SK321

46.711

100

0.468
  radA Streptococcus mitis NCTC 12261

46.491

100

0.466

Multiple sequence alignment