Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   EQH41_RS00195 Genome accession   NZ_CP035239
Coordinates   37138..37908 (+) Length   256 a.a.
NCBI ID   WP_000616164.1    Uniprot ID   Q97TA7
Organism   Streptococcus pneumoniae strain TVO_TIGR4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 32138..42908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH41_RS00175 (EQH41_00195) - 34057..34494 (+) 438 WP_000076479.1 CoA-binding protein -
  EQH41_RS00180 - 34535..34816 (+) 282 WP_001827121.1 hypothetical protein -
  EQH41_RS00185 (EQH41_00205) - 34813..35823 (-) 1011 WP_000009144.1 YeiH family protein -
  EQH41_RS00190 (EQH41_00210) - 35972..37141 (+) 1170 WP_000366370.1 pyridoxal phosphate-dependent aminotransferase -
  EQH41_RS00195 (EQH41_00215) recO 37138..37908 (+) 771 WP_000616164.1 DNA repair protein RecO Machinery gene
  EQH41_RS00200 (EQH41_00220) plsX 37905..38897 (+) 993 WP_000717458.1 phosphate acyltransferase PlsX -
  EQH41_RS00205 (EQH41_00225) - 38903..39136 (+) 234 WP_000136447.1 acyl carrier protein -
  EQH41_RS00210 (EQH41_00230) - 39173..39472 (+) 300 Protein_35 transposase family protein -
  EQH41_RS00215 (EQH41_00235) blpU 39675..39905 (+) 231 WP_001093487.1 bacteriocin-like peptide BlpU -
  EQH41_RS10855 - 39908..40033 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  EQH41_RS00220 (EQH41_00240) comA 40620..42773 (+) 2154 WP_000668284.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29787.35 Da        Isoelectric Point: 5.8959

>NTDB_id=295349 EQH41_RS00195 WP_000616164.1 37138..37908(+) (recO) [Streptococcus pneumoniae strain TVO_TIGR4]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=295349 EQH41_RS00195 WP_000616164.1 37138..37908(+) (recO) [Streptococcus pneumoniae strain TVO_TIGR4]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97TA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992