Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EQH42_RS05385 Genome accession   NZ_CP035238
Coordinates   1087984..1089651 (-) Length   555 a.a.
NCBI ID   WP_000923570.1    Uniprot ID   Q8DPN3
Organism   Streptococcus pneumoniae strain TVO_D39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1082984..1094651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH42_RS05360 (EQH42_05665) - 1084123..1084425 (-) 303 WP_000590559.1 PTS sugar transporter subunit IIB -
  EQH42_RS05365 (EQH42_05670) - 1084463..1084938 (-) 476 Protein_1077 PTS sugar transporter subunit IIA -
  EQH42_RS05370 - 1085119..1085271 (+) 153 WP_001809697.1 hypothetical protein -
  EQH42_RS05375 (EQH42_05680) lepA 1085352..1087175 (-) 1824 WP_001047216.1 translation elongation factor 4 -
  EQH42_RS05380 (EQH42_05685) - 1087254..1087982 (-) 729 WP_000133339.1 metallophosphoesterase family protein -
  EQH42_RS05385 (EQH42_05690) recN 1087984..1089651 (-) 1668 WP_000923570.1 DNA repair protein RecN Machinery gene
  EQH42_RS05390 (EQH42_05695) - 1089658..1090089 (-) 432 WP_001034414.1 arginine repressor -
  EQH42_RS05395 (EQH42_05700) - 1090082..1090897 (-) 816 WP_001041071.1 TlyA family RNA methyltransferase -
  EQH42_RS05400 (EQH42_05705) - 1090890..1091765 (-) 876 WP_000743809.1 polyprenyl synthetase family protein -
  EQH42_RS05405 (EQH42_05710) - 1091762..1091974 (-) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  EQH42_RS05410 (EQH42_05715) xseA 1091952..1093292 (-) 1341 WP_000417487.1 exodeoxyribonuclease VII large subunit -
  EQH42_RS05415 (EQH42_05720) udk 1093420..1094058 (-) 639 WP_001181378.1 uridine kinase -
  EQH42_RS05420 (EQH42_05730) - 1094166..1094468 (-) 303 WP_000985093.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62792.22 Da        Isoelectric Point: 4.6517

>NTDB_id=295276 EQH42_RS05385 WP_000923570.1 1087984..1089651(-) (recN) [Streptococcus pneumoniae strain TVO_D39]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=295276 EQH42_RS05385 WP_000923570.1 1087984..1089651(-) (recN) [Streptococcus pneumoniae strain TVO_D39]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCTATGAATGACATGGAAAGTGTCGAAGAGTATGATCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTCATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATGAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAAGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACGGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DPN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44