Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DLJ48_RS04590 Genome accession   NZ_CP029684
Coordinates   907895..909304 (+) Length   469 a.a.
NCBI ID   WP_128686331.1    Uniprot ID   -
Organism   Oenococcus sicerae strain UCMA15228     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 902895..914304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLJ48_RS04555 (DLJ48_04600) - 902985..904457 (-) 1473 WP_128686324.1 MDR family MFS transporter -
  DLJ48_RS04560 (DLJ48_04605) - 904644..905111 (+) 468 WP_128686325.1 MerR family transcriptional regulator -
  DLJ48_RS04565 (DLJ48_04610) - 905108..906154 (-) 1047 WP_128686326.1 AI-2E family transporter -
  DLJ48_RS04570 (DLJ48_04615) - 906315..906608 (-) 294 WP_128686327.1 GNAT family N-acetyltransferase -
  DLJ48_RS04575 (DLJ48_04620) - 906683..906874 (+) 192 WP_128686328.1 hypothetical protein -
  DLJ48_RS04580 (DLJ48_04625) - 906942..907397 (+) 456 WP_128686329.1 dUTP diphosphatase -
  DLJ48_RS04585 (DLJ48_04630) - 907397..907867 (+) 471 WP_128686330.1 NUDIX hydrolase -
  DLJ48_RS04590 (DLJ48_04635) radA 907895..909304 (+) 1410 WP_128686331.1 DNA repair protein RadA Machinery gene
  DLJ48_RS04595 (DLJ48_04640) rdgB 909456..910031 (+) 576 WP_128686332.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  DLJ48_RS04600 (DLJ48_04645) gltX 910060..911553 (+) 1494 WP_128686333.1 glutamate--tRNA ligase -
  DLJ48_RS04605 (DLJ48_04650) - 911687..912505 (+) 819 WP_128686334.1 phosphoribosyltransferase -
  DLJ48_RS04610 (DLJ48_04655) - 912535..913104 (+) 570 WP_128686335.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 50747.11 Da        Isoelectric Point: 5.8477

>NTDB_id=295234 DLJ48_RS04590 WP_128686331.1 907895..909304(+) (radA) [Oenococcus sicerae strain UCMA15228]
MVKAKTQFVCSNCGYTTAGYLGRCPNCGEWNTLIEEKIVPDAVINRKARISFDGRVAKPKRISEISGNEMPRVKTGMTEL
NRVLGGGIVPGSLILIGGDPGIGKSTLMLQVSGQLTKNQGSVLYVSGEESSNQIKLRADRLGVGADDFIVYPETDMAQIK
SIIQQIEPDYLVIDSVQTMQEPDMQSPIGSVAQVREVTADLMQIAKTNAITVFIVGHVTKDGSIAGPKILEHMVDTVLYF
EGDANYKYRILRTVKNRFGSTNELGIFEMRDHGLREVANPSEMFLEERLAGATGSAITASMEGSRPILVEVQALVAPTVF
GNAQRVTTGVDRNRVAQILAVLEKHANLLLQNQDAHVRITGGVKIDEPAADLAIALAVASSYHEKATNASDVFLGEVGLG
GEVRSISLIEDRLKEIAKLGFKRAIISKNNLSSIELPQHLEVVGVATLEEALKLGLGLDHFSDSSHFDH

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=295234 DLJ48_RS04590 WP_128686331.1 907895..909304(+) (radA) [Oenococcus sicerae strain UCMA15228]
ATGGTAAAAGCAAAAACACAATTCGTTTGTTCTAACTGCGGCTATACAACTGCTGGCTATCTCGGGCGTTGTCCAAATTG
TGGTGAATGGAATACACTTATCGAAGAAAAGATCGTGCCGGATGCAGTGATTAATCGCAAGGCTCGCATTAGTTTTGATG
GTCGGGTCGCAAAACCGAAAAGAATTTCGGAAATTTCCGGCAATGAAATGCCGCGGGTCAAAACCGGTATGACGGAACTT
AACCGTGTTTTAGGCGGCGGCATCGTCCCTGGCAGCTTGATTTTAATCGGTGGTGATCCGGGAATTGGCAAATCAACACT
CATGCTGCAAGTTTCCGGTCAATTGACGAAAAATCAGGGCAGCGTACTTTATGTTTCCGGTGAGGAATCAAGCAACCAGA
TAAAATTAAGAGCCGATCGTTTGGGTGTTGGTGCAGATGATTTCATCGTTTATCCAGAAACAGATATGGCTCAAATCAAA
TCAATTATTCAGCAAATTGAACCAGATTATTTAGTGATCGATTCCGTCCAGACAATGCAGGAACCGGATATGCAGTCGCC
GATCGGTTCAGTTGCCCAGGTGCGCGAAGTCACAGCTGATTTGATGCAGATCGCAAAAACAAATGCCATCACAGTCTTTA
TTGTTGGCCATGTTACGAAAGATGGTTCAATTGCCGGGCCGAAAATTCTCGAACATATGGTGGATACGGTTTTGTATTTT
GAAGGGGATGCTAACTATAAATATCGAATTTTACGAACTGTCAAAAATCGTTTTGGTTCGACCAATGAACTAGGCATTTT
CGAAATGCGTGATCACGGTCTCAGGGAAGTCGCTAATCCATCTGAAATGTTTCTTGAAGAGCGTCTGGCCGGTGCAACGG
GTTCGGCAATTACAGCCAGCATGGAAGGCAGTCGGCCAATTTTAGTTGAAGTGCAGGCACTGGTCGCACCAACTGTTTTT
GGTAATGCACAGCGTGTGACAACTGGTGTTGATCGTAATCGGGTAGCACAAATATTAGCCGTGCTTGAAAAACACGCTAA
CCTGCTTTTACAAAATCAAGATGCACATGTCCGCATCACGGGTGGCGTGAAGATCGATGAACCGGCTGCTGACTTGGCCA
TTGCTTTAGCTGTTGCGAGTTCTTACCATGAAAAAGCAACTAACGCTTCAGATGTATTTTTAGGTGAAGTTGGTTTAGGC
GGTGAAGTACGTTCAATTTCGTTGATCGAAGATCGTTTGAAAGAAATTGCCAAATTGGGTTTCAAACGCGCTATCATATC
GAAAAATAATCTGTCCAGCATTGAATTGCCGCAGCATCTAGAGGTTGTTGGTGTGGCGACTTTAGAGGAAGCTTTAAAAC
TAGGCTTAGGTCTTGATCATTTTTCTGACTCAAGTCATTTCGATCACTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(367-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(69-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

60.262

97.655

0.588
  radA Streptococcus pneumoniae Rx1

59.823

96.588

0.578
  radA Streptococcus pneumoniae D39

59.823

96.588

0.578
  radA Streptococcus pneumoniae R6

59.823

96.588

0.578
  radA Streptococcus pneumoniae TIGR4

59.823

96.588

0.578
  radA Streptococcus mitis NCTC 12261

59.603

96.588

0.576
  radA Streptococcus mitis SK321

59.603

96.588

0.576

Multiple sequence alignment