Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EQH43_RS04910 Genome accession   NZ_CP035237
Coordinates   966449..968116 (+) Length   555 a.a.
NCBI ID   WP_000923573.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_Taiwan19F-14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 961449..973116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH43_RS04875 (EQH43_05115) - 961636..961934 (+) 299 Protein_972 bacteriocin immunity protein -
  EQH43_RS04880 (EQH43_05125) udk 962042..962680 (+) 639 WP_001181378.1 uridine kinase -
  EQH43_RS04885 (EQH43_05130) xseA 962808..964148 (+) 1341 WP_000417447.1 exodeoxyribonuclease VII large subunit -
  EQH43_RS04890 (EQH43_05135) - 964126..964338 (+) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  EQH43_RS04895 (EQH43_05140) - 964335..965210 (+) 876 WP_000743819.1 polyprenyl synthetase family protein -
  EQH43_RS04900 (EQH43_05145) - 965203..966018 (+) 816 WP_001041079.1 TlyA family RNA methyltransferase -
  EQH43_RS04905 (EQH43_05150) - 966011..966442 (+) 432 WP_001034415.1 arginine repressor -
  EQH43_RS04910 (EQH43_05155) recN 966449..968116 (+) 1668 WP_000923573.1 DNA repair protein RecN Machinery gene
  EQH43_RS04915 (EQH43_05160) - 968118..968846 (+) 729 WP_000133310.1 metallophosphoesterase family protein -
  EQH43_RS04920 (EQH43_05165) lepA 968925..970748 (+) 1824 WP_001047216.1 translation elongation factor 4 -
  EQH43_RS04925 - 970829..970981 (-) 153 WP_000693359.1 hypothetical protein -
  EQH43_RS04930 (EQH43_05170) - 971161..971637 (+) 477 WP_000242188.1 PTS sugar transporter subunit IIA -
  EQH43_RS04935 (EQH43_05175) - 971675..971977 (+) 303 WP_000590559.1 PTS sugar transporter subunit IIB -
  EQH43_RS04940 (EQH43_05180) - 971985..972788 (+) 804 Protein_985 IS5 family transposase -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62791.28 Da        Isoelectric Point: 4.7067

>NTDB_id=295151 EQH43_RS04910 WP_000923573.1 966449..968116(+) (recN) [Streptococcus pneumoniae strain TVO_Taiwan19F-14]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNKMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=295151 EQH43_RS04910 WP_000923573.1 966449..968116(+) (recN) [Streptococcus pneumoniae strain TVO_Taiwan19F-14]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCTATGAATGACATGGAAAGTGTCGAAGAGTATGATCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTGATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATAAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACGGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44