Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EQH44_RS05605 Genome accession   NZ_CP035236
Coordinates   1127135..1128802 (-) Length   555 a.a.
NCBI ID   WP_000923608.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1902282     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1122135..1133802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH44_RS05575 (EQH44_05905) - 1122447..1123266 (-) 820 Protein_1120 IS5 family transposase -
  EQH44_RS05580 (EQH44_05910) - 1123274..1123576 (-) 303 WP_000590556.1 PTS sugar transporter subunit IIB -
  EQH44_RS05585 (EQH44_05915) - 1123614..1124090 (-) 477 WP_044814279.1 PTS sugar transporter subunit IIA -
  EQH44_RS05590 - 1124270..1124422 (+) 153 WP_001809697.1 hypothetical protein -
  EQH44_RS05595 (EQH44_05925) lepA 1124503..1126326 (-) 1824 WP_001047212.1 translation elongation factor 4 -
  EQH44_RS05600 (EQH44_05930) - 1126405..1127133 (-) 729 WP_000133329.1 metallophosphoesterase family protein -
  EQH44_RS05605 (EQH44_05935) recN 1127135..1128802 (-) 1668 WP_000923608.1 DNA repair protein RecN Machinery gene
  EQH44_RS05610 (EQH44_05940) - 1128809..1129240 (-) 432 WP_001034415.1 arginine repressor -
  EQH44_RS05615 (EQH44_05945) - 1129233..1130048 (-) 816 WP_001041080.1 TlyA family RNA methyltransferase -
  EQH44_RS05620 (EQH44_05950) - 1130041..1130916 (-) 876 WP_000743808.1 polyprenyl synthetase family protein -
  EQH44_RS05625 (EQH44_05955) - 1130913..1131125 (-) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  EQH44_RS05630 (EQH44_05960) xseA 1131103..1132443 (-) 1341 WP_000417494.1 exodeoxyribonuclease VII large subunit -
  EQH44_RS05635 (EQH44_05965) udk 1132571..1133209 (-) 639 WP_001181378.1 uridine kinase -
  EQH44_RS05640 (EQH44_05975) - 1133317..1133619 (-) 303 WP_000985088.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62842.33 Da        Isoelectric Point: 4.7083

>NTDB_id=295045 EQH44_RS05605 WP_000923608.1 1127135..1128802(-) (recN) [Streptococcus pneumoniae strain TVO_1902282]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGVPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLHLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=295045 EQH44_RS05605 WP_000923608.1 1127135..1128802(-) (recN) [Streptococcus pneumoniae strain TVO_1902282]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGTACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCCATGAATGACATGGAAAGTGTCGAAGAGTATGACCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTCATGCAGGTTGAGAATCGTTTGCACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCTAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCCCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATGAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTTTTGACGGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44

Multiple sequence alignment