Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EQH44_RS01845 Genome accession   NZ_CP035236
Coordinates   364305..364901 (-) Length   198 a.a.
NCBI ID   WP_000248787.1    Uniprot ID   H8ZYP5
Organism   Streptococcus pneumoniae strain TVO_1902282     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 359305..369901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH44_RS01840 (EQH44_01975) pbp1a 362149..364308 (-) 2160 WP_001040025.1 penicillin-binding protein PBP1A -
  EQH44_RS01845 (EQH44_01980) recU 364305..364901 (-) 597 WP_000248787.1 Holliday junction resolvase RecU Machinery gene
  EQH44_RS01850 (EQH44_01985) - 364967..365494 (+) 528 WP_000179555.1 DUF1273 domain-containing protein -
  EQH44_RS01855 (EQH44_01990) gpsB 365564..365893 (+) 330 WP_000146522.1 cell division regulator GpsB -
  EQH44_RS01865 (EQH44_02000) - 366379..367536 (+) 1158 WP_000711391.1 class I SAM-dependent RNA methyltransferase -
  EQH44_RS01870 (EQH44_02005) mapZ 367549..368943 (+) 1395 WP_000039276.1 mid-cell-anchored protein MapZ -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23130.53 Da        Isoelectric Point: 9.8515

>NTDB_id=295012 EQH44_RS01845 WP_000248787.1 364305..364901(-) (recU) [Streptococcus pneumoniae strain TVO_1902282]
MVNYPHKVSSQKRQTSLSQPKNFANRGMSFEKMINATNDYYLSQGLAVIHKKPTPIQIVQVDYPQRSRAKIVEAYFRQAS
TTDYSGVYNGYYIDFEVKETKQKRAIPMKNFHPHQIQHMEQVLAQQGICFVLLHFSSQQETYLLPAFDLIRFYHQDKGQK
SMPLEYIREYGYEIKAGAFPQIPYLNVIKEHLLGGKTR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=295012 EQH44_RS01845 WP_000248787.1 364305..364901(-) (recU) [Streptococcus pneumoniae strain TVO_1902282]
ATGGTCAACTATCCACATAAAGTTTCATCACAAAAAAGACAAACATCTCTTTCTCAACCCAAAAATTTCGCAAATCGAGG
AATGTCTTTTGAAAAGATGATCAATGCTACCAACGACTACTATTTGTCTCAGGGCTTGGCTGTTATACATAAGAAACCAA
CTCCTATTCAAATCGTACAAGTGGACTATCCACAACGAAGTCGTGCCAAGATTGTTGAAGCCTATTTTCGACAAGCTTCA
ACGACGGACTATTCTGGCGTTTATAATGGATATTACATCGACTTTGAAGTCAAGGAAACAAAACAAAAACGTGCGATTCC
GATGAAAAATTTTCATCCACATCAGATTCAGCATATGGAACAAGTCCTTGCCCAACAAGGAATCTGCTTTGTCCTTCTTC
ACTTTTCTTCTCAGCAAGAAACCTACTTATTGCCGGCATTCGATTTGATTCGCTTCTATCATCAAGATAAGGGACAAAAA
TCAATGCCACTTGAATATATTCGAGAATATGGATATGAAATCAAGGCTGGTGCCTTCCCTCAAATTCCTTATCTCAATGT
TATCAAAGAACATTTATTAGGTGGTAAAACAAGATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(26-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H8ZYP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.5

100

0.49

Multiple sequence alignment